*** empty log message ***

sienax

@@ -144,7 +144,8 @@ if [ $nseg = 2 ] ; then
     S=`${FSLDIR}/bin/avwstats ${I}_stdmaskbrain_pve_1 -m -v`
     xa=`echo $S | awk '{print $1}'`
     xb=`echo $S | awk '{print $3}'`
-    brain=`echo "2 k $xa $xb * $vscale * p" | dc -`
+    ubrain=`echo "2 k $xa $xb * 1 / p" | dc -`
+    nbrain=`echo "2 k $xa $xb * $vscale * 1 / p" | dc -`
 else
     if [ _$lm != _ ] ; then
 	${FSLDIR}/bin/avwmaths_32R $lm -bin -mul -1 -add 1 -mul ${I}_stdmaskbrain ${I}_stdmaskbrain
@@ -190,10 +191,11 @@ else
     uwhite=`echo "2 k $xa $xb * 1 / p" | dc -`
     nwhite=`echo "2 k $xa $xb * $vscale * 1 / p" | dc -`
     echo "WHITE              $nwhite $uwhite" >> ${I}.sienax
+
+    ubrain=`echo "2 k $uwhite $ugrey + 1 / p" | dc -`
+    nbrain=`echo "2 k $nwhite $ngrey + 1 / p" | dc -`
 fi
 
-ubrain=`echo "2 k $uwhite $ugrey + 1 / p" | dc -`
-nbrain=`echo "2 k $nwhite $ngrey + 1 / p" | dc -`
 echo "BRAIN              $nbrain $ubrain" >> ${I}.sienax
 
 ${FSLDIR}/bin/overlay 1 1 -c ${I} -a ${I}_stdmaskbrain_seg 1.9 5 ${I}_render