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Commit 3d31b977 authored by Duncan Mortimer's avatar Duncan Mortimer
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Very inefficient to keep splitting

parent 2e342a15
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......@@ -64,8 +64,9 @@ import os
fsldir = os.getenv('FSLDIR')
spobj = sp.run([fsldir+'/bin/fslstats', fsldir+'/data/standard/MNI152_T1_1mm_brain', '-V'], stdout = sp.PIPE)
sout = spobj.stdout.decode('utf-8')
vol_vox = float(sout.split()[0])
vol_mm = float(sout.split()[1])
results = sout.split()
vol_vox = float(results[0])
vol_mm = float(results[1])
print('Volumes are: ', vol_vox, ' in voxels and ', vol_mm, ' in mm')
```
......@@ -144,8 +145,9 @@ spobj = sp.run([fsldir+'/bin/fslmaths', infile, '-mas', fsldir+'/data/standard/M
# calculate volumes of masked image
spobj = sp.run([fsldir+'/bin/fslstats', outfile, '-V'], stdout = sp.PIPE)
sout = spobj.stdout.decode('utf-8')
vol_vox = float(sout.split()[0])
vol_mm = float(sout.split()[1])
results = sout.split()
vol_vox = float(results[0])
vol_mm = float(results[1])
print('Volumes are: ', vol_vox, ' in voxels and ', vol_mm, ' in mm')
```
......
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