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CHANGELOG.rst 13.67 KiB

This document contains the fslpy release history in reverse chronological order.

1.8.0 (Under development)

Added

  • New :mod:`.wrappers` package, containing wrapper functions for a range of FSL tools.
  • New :mod:`fsl.utils.run` module, to replace the :mod:`fsl.utils.callfsl` module.
  • New :mod:`fsl.utils.fslsub` module, containing a :func:`.fslsub.submit` function which submits a cluster job via fsl_sub (by Michiel Cottaar).
  • Assertions (in the :mod:`.assertions` module) can be disabled with the new :func:`.assertions.disabled` context manager.

Changed

  • The :func:`.tempdir` function has an option to not change to the newly created directory.

Deprecated

  • The :mod:`fsl.utils.callfsl` module (replaced with :mod:`fsl.utils.run`).

1.7.2 (Monday March 19th 2018)

Added

  • Added the :meth:`.MGHImage.voxToSurfMat` and related properties, giving access to the voxel-to-surface affine for an MGH image.

1.7.1 (Monday March 12th 2018)

Changed

  • Adjusted :func:`.parseVersionString` so it accepts .dev* suffixes.

Fixed

  • Removed deprecated use of :func:`.imagewrapper.canonicalShape`.

1.7.0 (Tuesday March 6th 2018)

Added

  • The :mod:`fsl.utils.assertions` module contains a range of functions which can be used to assert that some condition is met.
  • The :mod:`fsl.utils.ensure` module contains a range of functions (currently just one) which can be used to ensure that some condiution is met.

Changed

  • The :mod:`.settings` module now saves its files in a format that is compatible with Python 2 and 3.
  • The :func:`.tempdir` function now accepts a root argument, which specifies the location in which the temporary directory should be created.
  • An image's data source can now be set via :meth:`.Image.__init__`.
  • :meth:`.MGHImage` objects now have a :meth:`.MGHImage.save` method.
  • Adjustments to the conda package build and deployment process.
  • The :func:`.ImageWrapper.canonicalShape` function has been moved to the :mod:`.image` class.
  • The :func:`.ImageWrapper.naninfrange` function has been moved into its own :mod:`.naninfrange` module.

Fixed

  • Fixed a bug in the :class:`.MutexFactory` class.

Deprecated

  • :func:`.ImageWrapper.canonicalShape` (moved to the :mod:`.image` module)
  • :func:`.ImageWrapper.naninfrange` function (moved to the :mod:`.naninfrange` module)

1.6.8 (Monday February 12th 2018)

  • The atlasq, immv, imcp and imglob scripts suppress some warnings.

1.6.7 (Friday February 9th 2018)

  • More further adjustments to the conda package build.
  • Adjustments to pypi source distribution - the requirements-extra.txt file was not being included.

1.6.6 (Thursday February 8th 2018)

  • Further adjustments to the conda package build.

1.6.5 (Tuesday February 6th 2018)

  • Adjustments to the conda package build.