Skip to content
Snippets Groups Projects
Commit 05c5cbdf authored by Paul McCarthy's avatar Paul McCarthy :mountain_bicyclist:
Browse files

Two more fixes to imcp:

  - if moving a file from a group, need to remove the entire group
  - Special test for when dest is a non-existent directory
parent 401facbb
No related branches found
No related tags found
No related merge requests found
......@@ -18,6 +18,8 @@ import os
import os.path as op
import shutil
import nibabel as nib
import fsl.utils.path as fslpath
import fsl.data.image as fslimage
......@@ -53,7 +55,9 @@ def imcp(src,
copied. See :func:`immv`.
"""
import nibabel as nib
# special case - non-existent directory
if dest.endswith('/') and not op.isdir(dest):
raise fslpath.PathError('Directory does not exist: {}'.format(dest))
if op.isdir(dest):
dest = op.join(dest, op.basename(src))
......@@ -135,7 +139,13 @@ def imcp(src,
nib.save(img, dest)
if move:
os.remove(src)
# if input is an image pair, we
# need to remove all input files
srcs = fslpath.getFileGroup(src,
fslimage.ALLOWED_EXTENSIONS,
fslimage.FILE_GROUPS)
for src in srcs:
os.remove(src)
return
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment