Commit 23c46fa1 authored by Paul McCarthy's avatar Paul McCarthy 🚵
Browse files

RF: bids module updated to support files with any extension.

parent 3b8bc0af
......@@ -83,7 +83,11 @@ def parseFilename(filename):
sub-01_ses-01_task-stim_bold.nii.gz
has suffix ``bold``, and entities ``sub=01``, ``ses=01`` and ``task=stim``.
has suffix ``bold``, entities ``sub=01``, ``ses=01`` and ``task=stim``, and
extension ``.nii.gz``.
.. note:: This function assumes that no period (``.``) characters occur in
the body of a BIDS filename.
:returns: A tuple containing:
- A dict containing the entities
......@@ -97,7 +101,7 @@ def parseFilename(filename):
suffix = None
entities = []
filename = op.basename(filename)
filename = fslpath.removeExt(filename, ['.nii', '.nii.gz', '.json'])
filename = fslpath.removeExt(filename, firstDot=True)
parts = filename.split('_')
for part in parts[:-1]:
......@@ -148,7 +152,7 @@ def isBIDSFile(filename, strict=True):
"""
name = op.basename(filename)
pattern = r'([a-z0-9]+-[a-z0-9]+_)*([a-z0-9])+\.(nii|nii\.gz|json)'
pattern = r'([a-z0-9]+-[a-z0-9]+_)*([a-z0-9])+\.(.+)'
flags = re.ASCII | re.IGNORECASE
match = re.fullmatch(pattern, name, flags) is not None
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment