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Michiel Cottaar
fslpy
Commits
482a1290
Commit
482a1290
authored
6 years ago
by
Paul McCarthy
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RF: Image.ndims renamed to Image.ndim. New Image.data property - easy way to
get image data as numpy array.
parent
0ee48df0
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2 changed files
fsl/data/image.py
+21
-2
21 additions, 2 deletions
fsl/data/image.py
fsl/data/melodicimage.py
+1
-1
1 addition, 1 deletion
fsl/data/melodicimage.py
with
22 additions
and
3 deletions
fsl/data/image.py
+
21
−
2
View file @
482a1290
...
@@ -490,8 +490,7 @@ class Nifti(notifier.Notifier, meta.Meta):
...
@@ -490,8 +490,7 @@ class Nifti(notifier.Notifier, meta.Meta):
return
fileslice
.
canonical_slicers
(
sliceobj
,
self
.
__origShape
)
return
fileslice
.
canonical_slicers
(
sliceobj
,
self
.
__origShape
)
@property
def
ndim
(
self
):
def
ndims
(
self
):
"""
Returns the number of dimensions in this image. This number may not
"""
Returns the number of dimensions in this image. This number may not
match the number of dimensions specified in the NIFTI header, as
match the number of dimensions specified in the NIFTI header, as
trailing dimensions of length 1 are ignored. But it is guaranteed to be
trailing dimensions of length 1 are ignored. But it is guaranteed to be
...
@@ -500,6 +499,15 @@ class Nifti(notifier.Notifier, meta.Meta):
...
@@ -500,6 +499,15 @@ class Nifti(notifier.Notifier, meta.Meta):
return
len
(
self
.
__shape
)
return
len
(
self
.
__shape
)
@property
@deprecation.deprecated
(
deprecated_in
=
'
1.9.0
'
,
removed_in
=
'
2.0.0
'
,
details
=
'
Use ndim instead
'
)
def
ndims
(
self
):
"""
Deprecated - use :mod::meth:``ndim`` instead.
"""
return
self
.
ndim
()
@deprecation.deprecated
(
deprecated_in
=
'
1.1.0
'
,
@deprecation.deprecated
(
deprecated_in
=
'
1.1.0
'
,
removed_in
=
'
2.0.0
'
,
removed_in
=
'
2.0.0
'
,
details
=
'
Use ndims instead
'
)
details
=
'
Use ndims instead
'
)
...
@@ -1006,6 +1014,17 @@ class Image(Nifti):
...
@@ -1006,6 +1014,17 @@ class Image(Nifti):
return
self
.
__nibImage
return
self
.
__nibImage
@property
def
data
(
self
):
"""
Returns the image data as a ``numpy`` array.
.. warning:: Calling this method will cause the entire image to be
loaded into memory.
"""
self
.
__imageWrapper
.
loadData
()
return
self
[:]
@property
@property
def
saveState
(
self
):
def
saveState
(
self
):
"""
Returns ``True`` if this ``Image`` has been saved to disk, ``False``
"""
Returns ``True`` if this ``Image`` has been saved to disk, ``False``
...
...
This diff is collapsed.
Click to expand it.
fsl/data/melodicimage.py
+
1
−
1
View file @
482a1290
...
@@ -77,7 +77,7 @@ class MelodicImage(fslimage.Image):
...
@@ -77,7 +77,7 @@ class MelodicImage(fslimage.Image):
dataImage
=
fslimage
.
Image
(
dataFile
,
dataImage
=
fslimage
.
Image
(
dataFile
,
loadData
=
False
,
loadData
=
False
,
calcRange
=
False
)
calcRange
=
False
)
if
dataImage
.
ndim
s
>=
4
:
if
dataImage
.
ndim
>=
4
:
self
.
__tr
=
dataImage
.
pixdim
[
3
]
self
.
__tr
=
dataImage
.
pixdim
[
3
]
...
...
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