Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
F
fslpy
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Deploy
Releases
Container Registry
Model registry
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Michiel Cottaar
fslpy
Commits
6abd4abf
Commit
6abd4abf
authored
5 years ago
by
Paul McCarthy
Browse files
Options
Downloads
Patches
Plain Diff
RF,BF: Nifti.header is now protected via property setter - Failure in
Image.save was resulting in a Nifti without a header.
parent
1b56bbc5
No related branches found
Branches containing commit
No related tags found
No related merge requests found
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
fsl/data/image.py
+19
-7
19 additions, 7 deletions
fsl/data/image.py
with
19 additions
and
7 deletions
fsl/data/image.py
+
19
−
7
View file @
6abd4abf
...
...
@@ -254,7 +254,7 @@ class Nifti(notifier.Notifier, meta.Meta):
shape
,
pixdim
)
self
.
header
=
header
self
.
__
header
=
header
self
.
__shape
=
shape
self
.
__origShape
=
origShape
self
.
__pixdim
=
pixdim
...
...
@@ -492,6 +492,24 @@ class Nifti(notifier.Notifier, meta.Meta):
return
''
.
join
([
c
for
c
in
val
if
c
in
string
.
printable
]).
strip
()
@property
def
header
(
self
):
"""
Return a reference to the ``nibabel`` header object.
"""
return
self
.
__header
@header.setter
def
header
(
self
,
header
):
"""
Replace the ``nibabel`` header object managed by this ``Nifti``
with a new header. The new header must have the same dimensions,
voxel size, and orientation as the old one.
"""
new
=
Nifti
(
header
)
if
not
(
self
.
sameSpace
(
new
)
and
self
.
ndim
==
new
.
ndim
):
raise
ValueError
(
'
Incompatible header
'
)
self
.
__header
=
new
@property
def
niftiVersion
(
self
):
"""
Returns the NIFTI file version:
...
...
@@ -1411,12 +1429,6 @@ class Image(Nifti):
nib
.
save
(
self
.
__nibImage
,
tmpfname
)
# nibabel should close any old
# file handles when the image/
# header refs are deleted
self
.
__nibImage
=
None
self
.
header
=
None
# Copy to final destination,
# and reload from there
imcp
.
imcp
(
tmpfname
,
filename
,
overwrite
=
True
)
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment