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Commit ba57f116 authored by Paul McCarthy's avatar Paul McCarthy
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Gifti module unit tests

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tests/test_gifti.py 0 → 100644
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#!/usr/bin/env python
#
# test_gifti.py -
#
# Author: Paul McCarthy <pauldmccarthy@gmail.com>
#
import glob
import os.path as op
import numpy as np
import nibabel as nib
import pytest
import tests
import fsl.data.gifti as gifti
def test_GiftiSurface():
testdir = op.join(op.dirname(__file__), 'testdata')
testfile = op.join(testdir, 'example.surf.gii')
surf = gifti.GiftiSurface(testfile)
minbounds = np.array([ 59.50759888, 88.43039703, 72.10890198])
maxbounds = np.array([ 77.72619629, 128.40600586, 94.82050323])
minb, maxb = surf.getBounds()
assert surf.name == 'example'
assert surf.dataSource == testfile
assert tuple(surf.vertices.shape) == (642, 3)
assert tuple(surf.indices .shape) == (1280, 3)
assert isinstance(surf.surfImg, nib.gifti.GiftiImage)
assert np.all(np.isclose(minbounds, minb))
assert np.all(np.isclose(maxbounds, maxb))
def test_loadGiftiSurface():
testdir = op.join(op.dirname(__file__), 'testdata')
testfile = op.join(testdir, 'example.surf.gii')
gimg, verts, idxs = gifti.loadGiftiSurface(testfile)
assert isinstance(gimg, nib.gifti.GiftiImage)
assert tuple(verts.shape) == (642, 3)
assert tuple(idxs.shape) == (1280, 3)
badfiles = glob.glob(op.join(testdir, 'example_bad*surf.gii'))
for bf in badfiles:
with pytest.raises(Exception):
gifti.loadGiftiSurface(bf)
def test_GiftiSurface_loadGiftiVertexData():
testdir = op.join(op.dirname(__file__), 'testdata')
surffile = op.join(testdir, 'example.surf.gii')
shapefile = op.join(testdir, 'example.shape.gii')
txtfile = op.join(testdir, 'test_mesh_data.txt')
memdata = np.random.randint(1, 10, 642)
# load from .gii file
surf = gifti.GiftiSurface(surffile)
assert surf.loadVertexData(shapefile).shape == (642,)
# load from .txt file
assert surf.loadVertexData(txtfile).shape == (642,)
# load from memory
assert np.all(surf.loadVertexData('inmemdata', memdata) == memdata)
# check cached
assert surf.getVertexData(shapefile) .shape == (642,)
assert surf.getVertexData(txtfile) .shape == (642,)
assert surf.getVertexData('inmemdata').shape == (642,)
def test_loadGiftiVertexData():
testdir = op.join(op.dirname(__file__), 'testdata')
surffiles = glob.glob(op.join(testdir, 'example*surf.gii'))
for sf in surffiles:
with pytest.raises(Exception):
gifti.loadGiftiVertexData(sf)
ex3Dfile = op.join(testdir, 'example.shape.gii')
ex4Dfile = op.join(testdir, 'example4D.shape.gii')
ex4D2file = op.join(testdir, 'example4D_multiple_darrays.shape.gii')
gimg, data = gifti.loadGiftiVertexData(ex3Dfile)
assert isinstance(gimg, nib.gifti.GiftiImage)
assert tuple(data.shape) == (642,)
gimg, data = gifti.loadGiftiVertexData(ex4Dfile)
assert isinstance(gimg, nib.gifti.GiftiImage)
assert tuple(data.shape) == (642, 10)
gimg, data = gifti.loadGiftiVertexData(ex4D2file)
assert isinstance(gimg, nib.gifti.GiftiImage)
assert tuple(data.shape) == (642, 10)
def test_relatedFiles():
listing = [
'subject.L.ArealDistortion_FS.32k_fs_LR.shape.gii',
'subject.L.ArealDistortion_MSMSulc.32k_fs_LR.shape.gii',
'subject.L.BA.32k_fs_LR.label.gii',
'subject.L.MyelinMap.32k_fs_LR.func.gii',
'subject.L.MyelinMap_BC.32k_fs_LR.func.gii',
'subject.L.SmoothedMyelinMap.32k_fs_LR.func.gii',
'subject.L.SmoothedMyelinMap_BC.32k_fs_LR.func.gii',
'subject.L.aparc.32k_fs_LR.label.gii',
'subject.L.aparc.a2009s.32k_fs_LR.label.gii',
'subject.L.atlasroi.32k_fs_LR.shape.gii',
'subject.L.corrThickness.32k_fs_LR.shape.gii',
'subject.L.curvature.32k_fs_LR.shape.gii',
'subject.L.flat.32k_fs_LR.surf.gii',
'subject.L.inflated.32k_fs_LR.surf.gii',
'subject.L.midthickness.32k_fs_LR.surf.gii',
'subject.L.pial.32k_fs_LR.surf.gii',
'subject.L.sphere.32k_fs_LR.surf.gii',
'subject.L.sulc.32k_fs_LR.shape.gii',
'subject.L.thickness.32k_fs_LR.shape.gii',
'subject.L.very_inflated.32k_fs_LR.surf.gii',
'subject.L.white.32k_fs_LR.surf.gii',
'subject.R.ArealDistortion_FS.32k_fs_LR.shape.gii',
'subject.R.ArealDistortion_MSMSulc.32k_fs_LR.shape.gii',
'subject.R.BA.32k_fs_LR.label.gii',
'subject.R.MyelinMap.32k_fs_LR.func.gii',
'subject.R.MyelinMap_BC.32k_fs_LR.func.gii',
'subject.R.SmoothedMyelinMap.32k_fs_LR.func.gii',
'subject.R.SmoothedMyelinMap_BC.32k_fs_LR.func.gii',
'subject.R.aparc.32k_fs_LR.label.gii',
'subject.R.aparc.a2009s.32k_fs_LR.label.gii',
'subject.R.atlasroi.32k_fs_LR.shape.gii',
'subject.R.corrThickness.32k_fs_LR.shape.gii',
'subject.R.curvature.32k_fs_LR.shape.gii',
'subject.R.flat.32k_fs_LR.surf.gii',
'subject.R.inflated.32k_fs_LR.surf.gii',
'subject.R.midthickness.32k_fs_LR.surf.gii',
'subject.R.pial.32k_fs_LR.surf.gii',
'subject.R.sphere.32k_fs_LR.surf.gii',
'subject.R.sulc.32k_fs_LR.shape.gii',
'subject.R.thickness.32k_fs_LR.shape.gii',
'subject.R.very_inflated.32k_fs_LR.surf.gii',
'subject.R.white.32k_fs_LR.surf.gii',
'badly-formed-filename.surf.gii'
]
lsurfaces = [l for l in listing if (l.startswith('subject.L') and
l.endswith('surf.gii'))]
lrelated = [l for l in listing if (l.startswith('subject.L') and
not l.endswith('surf.gii'))]
rsurfaces = [l for l in listing if (l.startswith('subject.R') and
l.endswith('surf.gii'))]
rrelated = [l for l in listing if (l.startswith('subject.R') and
not l.endswith('surf.gii'))]
with tests.testdir() as testdir:
for l in listing:
with open(op.join(testdir, l), 'wt') as f:
f.write(l)
with pytest.raises(Exception):
gifti.relatedFiles('nonexistent')
badname = op.join(op.join(testdir, 'badly-formed-filename'))
assert len(gifti.relatedFiles(badname)) == 0
lsurfaces = [op.join(testdir, f) for f in lsurfaces]
rsurfaces = [op.join(testdir, f) for f in rsurfaces]
lrelated = [op.join(testdir, f) for f in lrelated]
rrelated = [op.join(testdir, f) for f in rrelated]
for s in lsurfaces:
result = gifti.relatedFiles(s)
assert sorted(lrelated) == sorted(result)
for s in rsurfaces:
result = gifti.relatedFiles(s)
assert sorted(rrelated) == sorted(result)
tests/testdata/example.shape.gii 0 → 100644
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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE GIFTI SYSTEM "http://www.nitrc.org/frs/download.php/115/gifti.dtd">
<GIFTI NumberOfDataArrays="1" Version="1.0">
<MetaData />
<LabelTable />
<DataArray ArrayIndexingOrder="RowMajorOrder"
DataType="NIFTI_TYPE_INT64"
Dim0="642"
Dimensionality="1"
Encoding="GZipBase64Binary"
Endian="LittleEndian"
ExternalFileName=""
ExternalFileOffset="0"
Intent="NIFTI_INTENT_NORMAL">
<MetaData />
<CoordinateSystemTransformMatrix>
<DataSpace>NIFTI_XFORM_UNKNOWN</DataSpace>
<TransformedSpace>NIFTI_XFORM_UNKNOWN</TransformedSpace>
<MatrixData>
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
</MatrixData>
</CoordinateSystemTransformMatrix>
<Data>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</Data>
</DataArray>
</GIFTI>
tests/testdata/example.surf.gii 0 → 100644
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− 0
View file @ ba57f116
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE GIFTI SYSTEM "http://www.nitrc.org/frs/download.php/115/gifti.dtd">
<GIFTI NumberOfDataArrays="2" Version="1.0">
<MetaData />
<LabelTable />
<DataArray ArrayIndexingOrder="RowMajorOrder"
DataType="NIFTI_TYPE_FLOAT32"
Dim0="642"
Dim1="3"
Dimensionality="2"
Encoding="GZipBase64Binary"
Endian="LittleEndian"
ExternalFileName=""
ExternalFileOffset="0"
Intent="NIFTI_INTENT_POINTSET">
<MetaData />
<CoordinateSystemTransformMatrix>
<DataSpace>NIFTI_XFORM_UNKNOWN</DataSpace>
<TransformedSpace>NIFTI_XFORM_UNKNOWN</TransformedSpace>
<MatrixData>
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
</MatrixData>
</CoordinateSystemTransformMatrix>
<Data>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<DataArray ArrayIndexingOrder="RowMajorOrder"
DataType="NIFTI_TYPE_UINT32"
Dim0="1280"
Dim1="3"
Dimensionality="2"
Encoding="GZipBase64Binary"
Endian="LittleEndian"
ExternalFileName=""
ExternalFileOffset="0"
Intent="NIFTI_INTENT_TRIANGLE">
<MetaData />
<CoordinateSystemTransformMatrix>
<DataSpace>NIFTI_XFORM_UNKNOWN</DataSpace>
<TransformedSpace>NIFTI_XFORM_UNKNOWN</TransformedSpace>
<MatrixData>
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
</MatrixData>
</CoordinateSystemTransformMatrix>
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JPsMH09irnR6yF+2au5kh3hIJp78TkV1rBdCZ03yjqL7DETqG+FudHTN/h65PXjJxgF5ApfzznRHeSXqCvFvQTbCW9yevzv1hr9y1drdBFltiFVjD5HVawtq42Wb1qgl1Evbzex4m1d7UjryU5wS4kU173t8U6aj8YszWZwXbQm7yej4l1cXVydUa64x1M+Z2pGWUF0xgPWaq/0BJrAG9HP2J6h9qWvE7kBLuQTPkqrIPulOv9aBfGVWawUfQmXxrWTT9T2iekZ6TBNF8xed3D78o66Hlr1O+wxOZT34H1EbuL9e6KlBNsB5nyZWF6JnsvPXSjn2D14fL6/iLW0313Vw80OmPaOzF5PYfszjnR+9qov8gSG019G86PmJ6BdiSvOznBLiJTvgbnRO909XyzJ+MqM9giepPXRzix3u57uU5FF1tiu6xg8jutYKe5+mT1qgl2MfXyuo8q1s/Vl7xe5ATbRaa83t+JDXD1Z8zeZAbbSW/yet4rNtg10DUI6R1fMOUPoqa9FUxj6H1h1O+yxCZS35d+xD5nfgORcoLtIlP+YJjeKX5FD4PpJ1h7uLzeP4oNdT/EdTpamDHNV0xe72GHsA563h31Oy2xhdT3Z33E9A64H3lDyAm2k0z5quyLnonr/e5QxlVmsAn0di/nR2yE+2Gu4aiDJaa9E5PXe4RhnJPvLdVfbIl1gPfh/IjpHcYA8oaRE+xiMuWP45zoTvPt9DWCfoItoDf5A2Gj3I90nYEutcR2W8HkL7GCnamfqaxeNcEupV5efx9BbKxrDHkjyQm2m0x53T8RG+8ax5ijyAx2Cb3J63md2CTtqc4Z0h2VYMqfSI3+HseE6KVEqt9tiZ1B/Rj6EXuR+U1Aygm2m0z58jDdiXmJHibRT7BmcHn9919sqvvJriloXcY0XzF53SOazDroeWXUX2KJraN+HOsjpjtMY8mbTE6wS8iUP4p90TNN3U+ayrjKDDaS3uT3sYLN8N9Mc01H+jsmwbR3YvJ6DjyNc/KapfpLLbHm8NGcHzE9gx5P3jRygl1KpvzJnBP9nZYP6WsG/QQ7m97ky8Bmu5/pmoUut8T2WMHkL7OCzXXNyepVE+xy6uV1f0NsvmseeTPJCbaHTHnd3xZb6FrAmLPJDHYZvcnrea/YEtci12KkO97BlL+YGt0DWcS4ui8e9Xssse7Uz6MfMd1BmUveInKC7SFTvhrroDvlul+yhHGVGWwSvR3Mf//Flrtf6lqG9Iw6mOYrJq97+EtZBz3vjvrLLLFzqV/A+ojp7wDMJ28pOcEuI1O+IvuiZ+Jl6Ws5/QTrRm9f8/lZbJX7Fa6VSHecgmnvxOT1HmEF50T3paL+cktsPPVzOD9ieoexkLwV5AS7nEz5kzgnulP1GX2top9g59DbPH5+xf4PhOTKtw==</Data>
</DataArray>
</GIFTI>
tests/testdata/example4D.shape.gii 0 → 100644
+ 6
− 0
View file @ ba57f116
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE GIFTI SYSTEM "http://www.nitrc.org/frs/download.php/115/gifti.dtd">
<GIFTI NumberOfDataArrays="1" Version="1.0"><MetaData /><LabelTable /><DataArray ArrayIndexingOrder="RowMajorOrder" DataType="NIFTI_TYPE_INT64" Dim0="642" Dim1="10" Dimensionality="2" Encoding="GZipBase64Binary" Endian="LittleEndian" ExternalFileName="" ExternalFileOffset="0" Intent="NIFTI_INTENT_NORMAL"><MetaData /><CoordinateSystemTransformMatrix><DataSpace>NIFTI_XFORM_UNKNOWN</DataSpace><TransformedSpace>NIFTI_XFORM_UNKNOWN</TransformedSpace><MatrixData> 1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
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\ No newline at end of file
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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE GIFTI SYSTEM "http://www.nitrc.org/frs/download.php/115/gifti.dtd">
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\ No newline at end of file
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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE GIFTI SYSTEM "http://www.nitrc.org/frs/download.php/115/gifti.dtd">
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<LabelTable />
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<MetaData />
<CoordinateSystemTransformMatrix>
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Encoding="GZipBase64Binary"
Endian="LittleEndian"
ExternalFileName=""
ExternalFileOffset="0"
Intent="NIFTI_INTENT_TRIANGLE">
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<TransformedSpace>NIFTI_XFORM_UNKNOWN</TransformedSpace>
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0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
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</DataArray>
</GIFTI>
tests/testdata/example_bad4.surf.gii 0 → 100644
+ 74
− 0
View file @ ba57f116
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE GIFTI SYSTEM "http://www.nitrc.org/frs/download.php/115/gifti.dtd">
<GIFTI NumberOfDataArrays="4" Version="1.0">
<MetaData />
<LabelTable />
<DataArray ArrayIndexingOrder="RowMajorOrder"
DataType="NIFTI_TYPE_FLOAT32"
Dim0="642"
Dim1="3"
Dimensionality="2"
Encoding="GZipBase64Binary"
Endian="LittleEndian"
ExternalFileName=""
ExternalFileOffset="0"
Intent="NIFTI_INTENT_POINTSET">
<MetaData />
<CoordinateSystemTransformMatrix>
<DataSpace>NIFTI_XFORM_UNKNOWN</DataSpace>
<TransformedSpace>NIFTI_XFORM_UNKNOWN</TransformedSpace>
<MatrixData>
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
</MatrixData>
</CoordinateSystemTransformMatrix>
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<DataArray ArrayIndexingOrder="RowMajorOrder"
DataType="NIFTI_TYPE_UINT32"
Dim0="1280"
Dim1="3"
Dimensionality="2"
Encoding="GZipBase64Binary"
Endian="LittleEndian"
ExternalFileName=""
ExternalFileOffset="0"
Intent="NIFTI_INTENT_TRIANGLE">
<MetaData />
<CoordinateSystemTransformMatrix>
<DataSpace>NIFTI_XFORM_UNKNOWN</DataSpace>
<TransformedSpace>NIFTI_XFORM_UNKNOWN</TransformedSpace>
<MatrixData>
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
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<DataArray ArrayIndexingOrder="RowMajorOrder"
DataType="NIFTI_TYPE_INT64"
Dim0="642"
Dimensionality="1"
Encoding="GZipBase64Binary"
Endian="LittleEndian"
ExternalFileName=""
ExternalFileOffset="0"
Intent="NIFTI_INTENT_NORMAL">
<MetaData />
<CoordinateSystemTransformMatrix>
<DataSpace>NIFTI_XFORM_UNKNOWN</DataSpace>
<TransformedSpace>NIFTI_XFORM_UNKNOWN</TransformedSpace>
<MatrixData>
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
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</MatrixData>
</CoordinateSystemTransformMatrix>
<Data>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</Data>
</DataArray>
</GIFTI>
tests/testdata/example_bad5.surf.gii 0 → 100644
+ 52
− 0
View file @ ba57f116
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE GIFTI SYSTEM "http://www.nitrc.org/frs/download.php/115/gifti.dtd">
<GIFTI NumberOfDataArrays="2" Version="1.0">
<MetaData />
<LabelTable />
<DataArray ArrayIndexingOrder="RowMajorOrder"
DataType="NIFTI_TYPE_UINT32"
Dim0="1280"
Dim1="3"
Dimensionality="2"
Encoding="GZipBase64Binary"
Endian="LittleEndian"
ExternalFileName=""
ExternalFileOffset="0"
Intent="NIFTI_INTENT_TRIANGLE">
<MetaData />
<CoordinateSystemTransformMatrix>
<DataSpace>NIFTI_XFORM_UNKNOWN</DataSpace>
<TransformedSpace>NIFTI_XFORM_UNKNOWN</TransformedSpace>
<MatrixData>
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0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
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Encoding="GZipBase64Binary"
Endian="LittleEndian"
ExternalFileName=""
ExternalFileOffset="0"
Intent="NIFTI_INTENT_TRIANGLE">
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<TransformedSpace>NIFTI_XFORM_UNKNOWN</TransformedSpace>
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0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
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</Data>
</DataArray>
</GIFTI>
tests/testdata/example_bad6.surf.gii 0 → 100644
+ 29
− 0
View file @ ba57f116
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE GIFTI SYSTEM "http://www.nitrc.org/frs/download.php/115/gifti.dtd">
<GIFTI NumberOfDataArrays="1" Version="1.0">
<MetaData />
<LabelTable />
<DataArray ArrayIndexingOrder="RowMajorOrder"
DataType="NIFTI_TYPE_UINT32"
Dim0="1280"
Dim1="3"
Dimensionality="2"
Encoding="GZipBase64Binary"
Endian="LittleEndian"
ExternalFileName=""
ExternalFileOffset="0"
Intent="NIFTI_INTENT_TRIANGLE">
<MetaData />
<CoordinateSystemTransformMatrix>
<DataSpace>NIFTI_XFORM_UNKNOWN</DataSpace>
<TransformedSpace>NIFTI_XFORM_UNKNOWN</TransformedSpace>
<MatrixData>
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
</MatrixData>
</CoordinateSystemTransformMatrix>
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