Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
F
fslpy
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Deploy
Releases
Container Registry
Model registry
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Michiel Cottaar
fslpy
Commits
cde39b46
Commit
cde39b46
authored
7 years ago
by
Paul McCarthy
Browse files
Options
Downloads
Patches
Plain Diff
Renamed RETURN to LOAD
parent
282ab2d6
No related branches found
No related tags found
No related merge requests found
Changes
2
Hide whitespace changes
Inline
Side-by-side
Showing
2 changed files
fsl/wrappers/__init__.py
+1
-1
1 addition, 1 deletion
fsl/wrappers/__init__.py
fsl/wrappers/wrapperutils.py
+12
-13
12 additions, 13 deletions
fsl/wrappers/wrapperutils.py
with
13 additions
and
14 deletions
fsl/wrappers/__init__.py
+
1
−
1
View file @
cde39b46
...
@@ -12,7 +12,7 @@ from .wrapperutils import (applyArgStyle, # noqa
...
@@ -12,7 +12,7 @@ from .wrapperutils import (applyArgStyle, # noqa
required
,
required
,
fileOrImage
,
fileOrImage
,
fileOrArray
,
fileOrArray
,
RETURN
,
LOAD
,
SHOW_IF_TRUE
,
SHOW_IF_TRUE
,
HIDE_IF_TRUE
)
HIDE_IF_TRUE
)
from
.bet
import
(
bet
,)
# noqa
from
.bet
import
(
bet
,)
# noqa
...
...
This diff is collapsed.
Click to expand it.
fsl/wrappers/wrapperutils.py
+
12
−
13
View file @
cde39b46
...
@@ -220,7 +220,7 @@ def argsToKwargs(func, args):
...
@@ -220,7 +220,7 @@ def argsToKwargs(func, args):
return
kwargs
return
kwargs
RETURN
=
object
()
LOAD
=
object
()
"""
Constant used by the :class:`_FileOrThing` class to indicate that an output
"""
Constant used by the :class:`_FileOrThing` class to indicate that an output
file should be loaded into memory and returned as a Python object.
file should be loaded into memory and returned as a Python object.
"""
"""
...
@@ -252,11 +252,11 @@ class _FileOrThing(object):
...
@@ -252,11 +252,11 @@ class _FileOrThing(object):
**Outputs**
**Outputs**
If an argument is given the special :data:`
RETURN
` value, it is assumed
If an argument is given the special :data:`
LOAD
` value, it is assumed
to be an output argument. In this case, it is replaced with a temporary
to be an output argument. In this case, it is replaced with a temporary
file name then, after the function has completed, that file is loaded
file name then, after the function has completed, that file is loaded
into memory, and the value returned (along with the function
'
s output,
into memory, and the value returned (along with the function
'
s output,
and any other arguments with a value of ``
RETURN
``).
and any other arguments with a value of ``
LOAD
``).
**Return value**
**Return value**
...
@@ -265,9 +265,8 @@ class _FileOrThing(object):
...
@@ -265,9 +265,8 @@ class _FileOrThing(object):
Functions decorated with a ``_FileOrThing`` decorator will always return a
Functions decorated with a ``_FileOrThing`` decorator will always return a
tuple, where the first element is the function
'
s actual return value. The
tuple, where the first element is the function
'
s actual return value. The
remainder of the tuple will contain any arguments that were given the
remainder of the tuple will contain any arguments that were given the
special ``RETURN`` value. ``None`` is returned for any ``RETURN``
special ``LOAD`` value. ``None`` is returned for any ``LOAD`` arguments
arguments corresponded to output files that were not generated by the
corresponded to output files that were not generated by the function.
function.
**Example**
**Example**
...
@@ -304,12 +303,12 @@ class _FileOrThing(object):
...
@@ -304,12 +303,12 @@ class _FileOrThing(object):
# The output is returned as a numpy
# The output is returned as a numpy
# array (in a tuple with the concat
# array (in a tuple with the concat
# function
'
s return value)
# function
'
s return value)
atoc = concat(
'
atob.txt
'
,
'
btoc.txt
'
,
RETURN
)[1]
atoc = concat(
'
atob.txt
'
,
'
btoc.txt
'
,
LOAD
)[1]
# The inputs are saved to temporary
# The inputs are saved to temporary
# files, and those file names are
# files, and those file names are
# passed to the concat function.
# passed to the concat function.
atoc = concat(np.diag([2, 2, 2, 0]), np.diag([3, 3, 3, 3]),
RETURN
)[1]
atoc = concat(np.diag([2, 2, 2, 0]), np.diag([3, 3, 3, 3]),
LOAD
)[1]
"""
"""
...
@@ -318,7 +317,7 @@ class _FileOrThing(object):
...
@@ -318,7 +317,7 @@ class _FileOrThing(object):
:arg prepareThing: Function which
:arg prepareThing: Function which
:arg loadThing: Function which is called for arguments that
:arg loadThing: Function which is called for arguments that
were set to :data:`
RETURN
`.
were set to :data:`
LOAD
`.
:arg things:
:arg things:
"""
"""
...
@@ -343,7 +342,7 @@ class _FileOrThing(object):
...
@@ -343,7 +342,7 @@ class _FileOrThing(object):
def
__wrapper
(
self
,
func
,
isFileOrThing
,
*
args
,
**
kwargs
):
def
__wrapper
(
self
,
func
,
isFileOrThing
,
*
args
,
**
kwargs
):
"""
Function which wraps ``func``, ensuring that any arguments of
"""
Function which wraps ``func``, ensuring that any arguments of
type ``Thing`` are saved to temporary files, and any arguments
type ``Thing`` are saved to temporary files, and any arguments
with the value :data:`
RETURN
` are loaded and returned.
with the value :data:`
LOAD
` are loaded and returned.
:arg func: The func being wrapped.
:arg func: The func being wrapped.
...
@@ -368,9 +367,9 @@ class _FileOrThing(object):
...
@@ -368,9 +367,9 @@ class _FileOrThing(object):
result
=
func
(
**
kwargs
)
result
=
func
(
**
kwargs
)
# Load the output things that
# Load the output things that
# were specified as RETURN
outthings
=
[]
outthings
=
[]
for
of
in
outfiles
:
for
of
in
outfiles
:
# were specified as LOAD
# output file didn't get created
# output file didn't get created
if
not
op
.
exists
(
of
):
if
not
op
.
exists
(
of
):
...
@@ -456,7 +455,7 @@ def fileOrImage(*imgargs):
...
@@ -456,7 +455,7 @@ def fileOrImage(*imgargs):
# caller has requested that it be
# caller has requested that it be
# returned from the function call
# returned from the function call
# as an in-memory image.
# as an in-memory image.
elif
val
==
RETURN
:
elif
val
==
LOAD
:
newval
=
op
.
join
(
workdir
,
'
{}.nii.gz
'
.
format
(
name
))
newval
=
op
.
join
(
workdir
,
'
{}.nii.gz
'
.
format
(
name
))
outfile
=
newval
outfile
=
newval
...
@@ -498,7 +497,7 @@ def fileOrArray(*arrargs):
...
@@ -498,7 +497,7 @@ def fileOrArray(*arrargs):
# This is an output, and the caller has
# This is an output, and the caller has
# requested that it be returned from the
# requested that it be returned from the
# function call as an in-memory array.
# function call as an in-memory array.
elif
val
==
RETURN
:
elif
val
==
LOAD
:
newval
=
op
.
join
(
workdir
,
'
{}.txt
'
.
format
(
name
))
newval
=
op
.
join
(
workdir
,
'
{}.txt
'
.
format
(
name
))
outfile
=
newval
outfile
=
newval
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment