Commits · 2777a1905ae7c472f5c6b14f3d4b228c8f320a6d · Michiel Cottaar / fslpy

Dec 14, 2017
- Bugfix - dicom json file sorting was not taking into account file names with · 2777a190
  Paul McCarthy authored 7 years ago
  
  non-numeric characters in prefix.
  2777a190
Dec 13, 2017
- filenotfounderror no exist in python 2 · dac9abcc
  Paul McCarthy authored 7 years ago
  
  dac9abcc
- Optimistic changelog · bc8cfd31
  Paul McCarthy authored 7 years ago
  
  bc8cfd31
- DICOM unit test checks image data access · 40b20a78
  Paul McCarthy authored 7 years ago
  
  40b20a78
- DICOM images are force-loaded into memory · c11e9a7f
  Paul McCarthy authored 7 years ago
  
  c11e9a7f
- subprocess.DEVNULL only exists in python >= 3.3 · adaf7bbb
  Paul McCarthy authored 7 years ago
  
  adaf7bbb
- Image.dtype method uses imagewrapper instead of nibImage.dataobj, as the image · aa793030
  Paul McCarthy authored 7 years ago
  
  might be in memory.
  aa793030
- don't need pydicom · 5c29c315
  Paul McCarthy authored 7 years ago
  
  5c29c315
- Changelog · 15e9c10d
  Paul McCarthy authored 7 years ago
  
  15e9c10d
- Unit tests for tempdir module · 38956814
  Paul McCarthy authored 7 years ago
  
  38956814
- Unit tests for dicom module · 9407da2c
  Paul McCarthy authored 7 years ago
  
  9407da2c
- dicom module checks to see that dcm2niix is present and recent · dec4385d
  Paul McCarthy authored 7 years ago
  
  dec4385d
Dec 10, 2017
- Note in file comments · 8ca9e9ca
  Paul McCarthy authored 7 years ago
  
  8ca9e9ca
- Little adjustments · 18bb892c
  Paul McCarthy authored 7 years ago
  
  18bb892c
- docs for new modules · e8ea00dc
  Paul McCarthy authored 7 years ago
  
  e8ea00dc
- Note about dcm2niix in README · cfaec4e1
  Paul McCarthy authored 7 years ago
  
  cfaec4e1
- Wrappers around dcm2niix. · 5d2dd7cb
  Paul McCarthy authored 7 years ago
  
  5d2dd7cb
- Removed dcmstack · f62f06d6
  Paul McCarthy authored 7 years ago
  
  f62f06d6
Dec 09, 2017
- New module tempdir, which contains tempdir function · 7a2dc23f
  Paul McCarthy authored 7 years ago
  
  7a2dc23f
Dec 08, 2017
- Fleshed out wrappers around pydicom/dcmstack. But I think I've just decided to · d74b3d88
  Paul McCarthy authored 7 years ago
  
  use dcm2niix instead as it is orders of magnitude faster.
  d74b3d88
- Using nibabel version of axcodes2ornt instead of dcmstack version, as the · 8f9bed31
  Paul McCarthy authored 7 years ago
  
  latter is buggy. Didn't bother to figure out the bug.
  8f9bed31
- Various python 2/3 fixes in dcmstack · d4ce30ae
  Paul McCarthy authored 7 years ago
  
  d4ce30ae
- dcmstack.parse_and_group allows open pydicom objects to be passed in. · 07fe08cf
  Paul McCarthy authored 7 years ago
  
  07fe08cf
- Fixes to dcmstack to make it work with python3 and pydicom:master · 69ad3ffb
  Paul McCarthy authored 7 years ago
  
  69ad3ffb
Dec 07, 2017
- New dependency · aa4a73bd
  Paul McCarthy authored 7 years ago
  
  aa4a73bd
- empty dicom modue which will abstract nibabel/pydicom/dcmstack · b9ebcbf8
  Paul McCarthy authored 7 years ago
  
  b9ebcbf8
- Note about dcmstack · 632744e4
  Paul McCarthy authored 7 years ago
  
  632744e4
- Including a copy of dcmstack, which will be removed when it is brought up to · ece0bd63
  Paul McCarthy authored 7 years ago
  
  date.
  ece0bd63
- Fixes to readme · 8dc1a740
  Paul McCarthy authored 7 years ago
  
  8dc1a740
Dec 05, 2017
- Changelog · ca78264d
  Paul McCarthy authored 7 years ago
  
  ca78264d
- Adjustments to atlasq tests · 2ad3a364
  Paul McCarthy authored 7 years ago
  
  2ad3a364
- Small bugfixes in atlasq, which never arose because I assumed that all atlas · de5013fc
  Paul McCarthy authored 7 years ago
  
  files have int type, which they don't. Also atlases handles spaces in XML specifications
  de5013fc
- More memory reduction in unit tests · 716f5b18
  Paul McCarthy authored 7 years ago
  
  716f5b18
- Adjusted idle tests - causing issues in some docker environments · 4c2858cb
  Paul McCarthy authored 7 years ago
  
  4c2858cb
- Boolean masks cannot be used when image is kept on disk. Making unit tests · 70af6786
  Paul McCarthy authored 7 years ago
  
  pass, but this should probably be fixed.
  70af6786
- make logging quiet when running tests · c1d9e2ec
  Paul McCarthy authored 7 years ago
  
  c1d9e2ec
Dec 04, 2017
- CI jobs are still being killed due to (I think) memory usage · d6e18518
  Paul McCarthy authored 7 years ago
  
  d6e18518
- More trying to reduce memory usage' · 047ab19a
  Paul McCarthy authored 7 years ago
  
  047ab19a
- Try to stop CI jobs from being killed? · 0da742af
  Paul McCarthy authored 7 years ago
  
  0da742af
- Fix to test script · 8346713f
  Paul McCarthy authored 7 years ago
  
  8346713f