Commits · 570a239fae3d5aeb818d558019e371cf5e117f6a · Michiel Cottaar / fslpy

Sep 03, 2019
- ENH: Support for reading "statistic" xml atlas descriptions · 570a239f
  Paul McCarthy authored 5 years ago
  
  570a239f
Sep 02, 2019
- BUG: remove deprecated method · d822f419
  Michiel Cottaar authored 5 years ago
  
  d822f419
Aug 22, 2019
- ENH: Simple Image.iscomplex method · c71c1f4d
  Paul McCarthy authored 5 years ago
  
  c71c1f4d
Aug 16, 2019
- ENH: New trees for feat and vbm · 0791af37
  Paul McCarthy authored 5 years ago
  
  0791af37
Aug 15, 2019
- ENH: look for sub-trees in parent tree directory · fa643260
  Michiel Cottaar authored 5 years ago
  
  fa643260
Aug 11, 2019
- BF: FileTreeQuery was not handling "scalar" templates, i.e. templates · 60614f25
  Paul McCarthy authored 5 years ago
  
  which do not vary, and only match zero or one file.
  60614f25
Aug 10, 2019
- RF: Add tree attribute to FileTreeQuery for convenience · d7202e8f
  Paul McCarthy authored 5 years ago
  
  d7202e8f
- RF: Sub-trees are named by their short_name. Refactored query module to make · b1736fa6
  Paul McCarthy authored 5 years ago
  
  more sense, and to make it easier to un-ambiguouosly identify the location of a Match in a filetree hierarchy
  b1736fa6
- ENH: Add "name" property to the FileTree class · ec2e18aa
  Paul McCarthy authored 5 years ago
  
  ec2e18aa
- RF: Match objects keep a ref to the associated FileTree · 9f344c6d
  Paul McCarthy authored 5 years ago
  
  9f344c6d
Aug 09, 2019
- ENH: Cache.__contains__ method · f95d75ac
  Paul McCarthy authored 5 years ago
  
  f95d75ac
Aug 06, 2019
- ENH: Cache has an lru option · 0de46cca
  Paul McCarthy authored 5 years ago
  
  0de46cca
- MNT: Version · ca71ce28
  Paul McCarthy authored 5 years ago
  
  ca71ce28
- DOC: X5 warning, missing rst stub · 65975db7
  Paul McCarthy authored 5 years ago
  
  65975db7
Jul 30, 2019
- RF: Make vest loader a bit more lenient · 9f204083
  Paul McCarthy authored 5 years ago
  
  9f204083
Jul 24, 2019
- MNT: post-release version bump · 5173d7ef
  Paul McCarthy authored 5 years ago
  
  5173d7ef
- MNT: Version · 8f6b3da2
  Paul McCarthy authored 5 years ago
  
  8f6b3da2
- RF: Tweaks to x5 scripts · 1587e85a
  Paul McCarthy authored 5 years ago
  
  1587e85a
- RF: Let argparse decide whether args are invalid · a53e041f
  Paul McCarthy authored 5 years ago
  
  a53e041f
- RF: Use same interp setting when resampling deformation field to · 46b9e4f8
  Paul McCarthy authored 5 years ago
  
  alternate reference
  46b9e4f8
Jul 23, 2019
- RF: applyDeformation supports input image with different FOV to original · 588f2bf8
  Paul McCarthy authored 5 years ago
  
  source image
  588f2bf8
- RF: Adjust roi module to use new import · b41c630c
  Paul McCarthy authored 5 years ago
  
  b41c630c
- RF: Print help on no-args · 3aef4975
  Paul McCarthy authored 5 years ago
  
  3aef4975
- RF: Warning message for convert/apply_x5 · 74812ead
  Paul McCarthy authored 5 years ago
  
  74812ead
- BF: Call existent parseVersionString function, as opposed to non-existent · a4f06be4
  Paul McCarthy authored 5 years ago
  
  variant. applyDeformation/convertDeformationType/Space were assuming voxel alignment between deformation field and reference image.
  a4f06be4
- RF: Reference image no longer needs to be in the same space as a deformation · 54ce09bd
  Paul McCarthy authored 5 years ago
  
  field
  54ce09bd
- RF: More sensible initial X5 version · b51fe1f5
  Paul McCarthy authored 5 years ago
  
  b51fe1f5
- DOC: Fixes and tweaks · 6d912c17
  Paul McCarthy authored 5 years ago
  
  6d912c17
- DOC: Formatting, tweaks · 3703fb5a
  Paul McCarthy authored 5 years ago
  
  3703fb5a
- BF: Fix to argument specs · 15603d98
  Paul McCarthy authored 5 years ago
  
  15603d98
- BF: Can't short-cut convertDeformationType, as it causes inf recursion between · 15ddfed9
  Paul McCarthy authored 5 years ago
  
  DefField.deformationType and detectDeformationType. Also fix applyDeformation where not using altref
  15ddfed9
- ENH: New fsl_apply_x5 script, to apply a X5 transformation to an image · 309da951
  Paul McCarthy authored 5 years ago
  
  309da951
- ENH: New function to apply a deformation field. Easier than anticipated. · 7adfdb19
  Paul McCarthy authored 5 years ago
  
  7adfdb19
- ENH: parse_data.Image allows additional Image.__init__ arguments to be · 65a51503
  Paul McCarthy authored 5 years ago
  
  passed. Used by fsl_convert_x5
  65a51503
- ENH: resampleToReference now accepts a custom matrix, allowing us to apply a · 07fc4c17
  Paul McCarthy authored 5 years ago
  
  transformation (e.g. FLIRT registration) during the resampling. Missed imports in deprecated fsl.utils.transform
  07fc4c17
- RF: Update convert_x5 script · 54f07a26
  Paul McCarthy authored 5 years ago
  
  54f07a26
- RF,BF: Refactored x5/fnirt modules for new specs - I think the refactoring is · 66c008d5
  Paul McCarthy authored 5 years ago
  
  complete?
  66c008d5
- RF: Update x5 i/o code to adhere to new spec; fix bug in · ed5835ab
  Paul McCarthy authored 5 years ago
  
  nonlinear.DeformationField
  ed5835ab
- RF: Minor refactorings; the only real change is that a deformation field · 4e6e03ca
  Paul McCarthy authored 5 years ago
  
  is no longer assumed to be aligned with the reference in voxels - it is only assumed to be aligned to the reference in world coordinates.
  4e6e03ca
- RF,BK: Change nomenclature in nonlinear module. More to come. · ca204fed
  Paul McCarthy authored 5 years ago
  
  ca204fed