Commits · 6d16a2a852231e4fbfec38791dda547e784a2c26 · Michiel Cottaar / fslpy

Jul 09, 2018
- RF: BET should no longer list output as a loadable thing. · 6d16a2a8
  Paul McCarthy authored 6 years ago
  
  6d16a2a8
- BF: Fix py2 syntax error. · daf308f5
  Paul McCarthy authored 6 years ago
  
  daf308f5
- TEST: Basic unit test for outprefix option · da6d3389
  Paul McCarthy authored 6 years ago
  
  da6d3389
- RF,ENH: fileOrThing uses file basename as names in results dictionary for · 35aa3ba7
  Paul McCarthy authored 6 years ago
  
  prefixed-outputs. Bet wrapper uses new outprefix option.
  35aa3ba7
- ENH: fileOrThing decorator now accepts an "outprefix" argument, which can be · 547512ad
  Paul McCarthy authored 6 years ago
  
  used as a wildcard - all files which begin with outprefix can be specified as keyword arguments and LOADed.
  547512ad
- MNT: remove pytest-runner as a dependency · 254371d1
  Paul McCarthy authored 6 years ago
  
  254371d1
- ENH: Process stdout wrapper forwards lines in real time. · a3be7cb8
  Paul McCarthy authored 6 years ago
  
  a3be7cb8
- Merge branch 'enh/extract_noise_script' into 'master' · 431c4d59
  Paul McCarthy authored 6 years ago
  
  Enh/extract noise script See merge request fsl/fslpy!58
  431c4d59
Jul 08, 2018
- TEST: Another test broken by nibabel upgrade · 904de71a
  Paul McCarthy authored 6 years ago
  
  904de71a
- TEST: Nibabel/indexed_gzip updates broke some tests · 248e1a78
  Paul McCarthy authored 6 years ago
  
  248e1a78
Jul 02, 2018
- TEST: More comprehensive tests for extract_noise · 49dd588f
  Paul McCarthy authored 6 years ago
  
  49dd588f
- BF: Couple of small tweaks · c6beb86d
  Paul McCarthy authored 6 years ago
  
  c6beb86d
- TEST: Update tests · f8f758ae
  Paul McCarthy authored 6 years ago
  
  f8f758ae
- RF: Don't be lenient, error on bad components or confounds · 98e181dc
  Paul McCarthy authored 6 years ago
  
  98e181dc
- TEST: Unit tests for extract_noise. Needs a couple more. · 86ae7caa
  Paul McCarthy authored 6 years ago
  
  86ae7caa
- RF: Drop bad component indices · 998f3d77
  Paul McCarthy authored 6 years ago
  
  998f3d77
- TEST: Extend fixlabels unit tests · 7f827603
  Paul McCarthy authored 6 years ago
  
  7f827603
- DOC: Change recommended commit label from MAINT to MNT · d6e2b3d9
  Paul McCarthy authored 6 years ago
  
  d6e2b3d9
- MNT: Specify entry point for extract_noise script. · 2416af63
  Paul McCarthy authored 6 years ago
  
  2416af63
- ENH: New extract_noise script, for extracting ICA time series. · 08de23d5
  Paul McCarthy authored 6 years ago
  
  08de23d5
- ENH: fixlabels.loadLabelFile can now return list of noise components specified · abbad5a0
  Paul McCarthy authored 6 years ago
  
  in file.
  abbad5a0
Jun 04, 2018
- Merge branch 'maint/post-release' into 'master' · ac3fd5c1
  Paul McCarthy authored 6 years ago
  
  Maint/post release See merge request fsl/fslpy!57
  ac3fd5c1
- MAINT: Post-release version bump · 1d880f3c
  Paul McCarthy authored 6 years ago
  
  1d880f3c
- DOC: Changelog · 6b89fd1c
  Paul McCarthy authored 6 years ago
  
  6b89fd1c
May 31, 2018
- Merge branch 'bf/deprecated_ndims' into 'master' · 2fea8224
  Paul McCarthy authored 6 years ago
  
  BF: Image.ndims (deprecated) was broken See merge request fsl/fslpy!56
  2fea8224
- TEST: Test Image.ndims · ae568f64
  Paul McCarthy authored 6 years ago
  
  ae568f64
- BF: Image.ndims (deprecated) was broken · 2955607c
  Paul McCarthy authored 6 years ago
  
  2955607c
- Merge branch 'maint/conda_deploy' into 'master' · e6eae8f7
  Paul McCarthy authored 6 years ago
  
  Maint/conda deploy See merge request fsl/fslpy!55
  e6eae8f7
- CI: Make pip retry failed downloads. · 1e3a470d
  Paul McCarthy authored 6 years ago
  
  1e3a470d
- MAINT: Infrastructure to update conda channel after deploy · b0a2c67f
  Paul McCarthy authored 6 years ago
  
  b0a2c67f
May 30, 2018
- Merge branch 'rf/wrapper_updates' into 'master' · d4c36b80
  Paul McCarthy authored 6 years ago
  
  Rf/wrapper updates See merge request fsl/fslpy!54
  d4c36b80
- DOC: Changelog · d9a43461
  Paul McCarthy authored 6 years ago
  
  d9a43461
- BF: Forgot property decorator on Image.ndim · f9904a56
  Paul McCarthy authored 6 years ago
  
  f9904a56
May 28, 2018
- TEST: mockFSLDIR helper function clobbers fsldevdir · 5d842760
  Paul McCarthy authored 6 years ago
  
  5d842760
- RF: Changed default stream handling for cmdwrapper/fslwrapper decorators · 3c7bff49
  Paul McCarthy authored 6 years ago
  
  3c7bff49
- TEST: Expanded run module unit tests · 257f6b80
  Paul McCarthy authored 6 years ago
  
  257f6b80
- RF,ENH: run now accepts a "log" argument, which allows control over where · a34afa7c
  Paul McCarthy authored 6 years ago
  
  stdout/stderr streams go.
  a34afa7c
May 27, 2018
- TEST: Unit test for fsldir/fsldevdir/fsl_prefix · 3738b75f
  Paul McCarthy authored 6 years ago
  
  3738b75f
- RF,ENH: Simplified management of $FSLDIR. Added $FSLDEVDIR. runfsl function · f7bf82cb
  Paul McCarthy authored 6 years ago
  
  gives $FSLDEVDIR precedence, and also allows a global override.
  f7bf82cb
- RF: Many bet parameters were missing. · badd80c8
  Paul McCarthy authored 6 years ago
  
  badd80c8