Commits · 98e181dcc4d1ca162e8a656edc00f1b0a1e6e123 · Michiel Cottaar / fslpy

Jul 02, 2018
- RF: Don't be lenient, error on bad components or confounds · 98e181dc
  Paul McCarthy authored 6 years ago
  
  98e181dc
- TEST: Unit tests for extract_noise. Needs a couple more. · 86ae7caa
  Paul McCarthy authored 6 years ago
  
  86ae7caa
- RF: Drop bad component indices · 998f3d77
  Paul McCarthy authored 6 years ago
  
  998f3d77
- TEST: Extend fixlabels unit tests · 7f827603
  Paul McCarthy authored 6 years ago
  
  7f827603
- DOC: Change recommended commit label from MAINT to MNT · d6e2b3d9
  Paul McCarthy authored 6 years ago
  
  d6e2b3d9
- MNT: Specify entry point for extract_noise script. · 2416af63
  Paul McCarthy authored 6 years ago
  
  2416af63
- ENH: New extract_noise script, for extracting ICA time series. · 08de23d5
  Paul McCarthy authored 6 years ago
  
  08de23d5
- ENH: fixlabels.loadLabelFile can now return list of noise components specified · abbad5a0
  Paul McCarthy authored 6 years ago
  
  in file.
  abbad5a0
Jun 04, 2018
- Merge branch 'maint/post-release' into 'master' · ac3fd5c1
  Paul McCarthy authored 6 years ago
  
  Maint/post release See merge request fsl/fslpy!57
  ac3fd5c1
- MAINT: Post-release version bump · 1d880f3c
  Paul McCarthy authored 6 years ago
  
  1d880f3c
- DOC: Changelog · 6b89fd1c
  Paul McCarthy authored 6 years ago
  
  6b89fd1c
May 31, 2018
- Merge branch 'bf/deprecated_ndims' into 'master' · 2fea8224
  Paul McCarthy authored 6 years ago
  
  BF: Image.ndims (deprecated) was broken See merge request fsl/fslpy!56
  2fea8224
- TEST: Test Image.ndims · ae568f64
  Paul McCarthy authored 6 years ago
  
  ae568f64
- BF: Image.ndims (deprecated) was broken · 2955607c
  Paul McCarthy authored 6 years ago
  
  2955607c
- Merge branch 'maint/conda_deploy' into 'master' · e6eae8f7
  Paul McCarthy authored 6 years ago
  
  Maint/conda deploy See merge request fsl/fslpy!55
  e6eae8f7
- CI: Make pip retry failed downloads. · 1e3a470d
  Paul McCarthy authored 6 years ago
  
  1e3a470d
- MAINT: Infrastructure to update conda channel after deploy · b0a2c67f
  Paul McCarthy authored 6 years ago
  
  b0a2c67f
May 30, 2018
- Merge branch 'rf/wrapper_updates' into 'master' · d4c36b80
  Paul McCarthy authored 6 years ago
  
  Rf/wrapper updates See merge request fsl/fslpy!54
  d4c36b80
- DOC: Changelog · d9a43461
  Paul McCarthy authored 6 years ago
  
  d9a43461
- BF: Forgot property decorator on Image.ndim · f9904a56
  Paul McCarthy authored 6 years ago
  
  f9904a56
May 28, 2018
- TEST: mockFSLDIR helper function clobbers fsldevdir · 5d842760
  Paul McCarthy authored 6 years ago
  
  5d842760
- RF: Changed default stream handling for cmdwrapper/fslwrapper decorators · 3c7bff49
  Paul McCarthy authored 6 years ago
  
  3c7bff49
- TEST: Expanded run module unit tests · 257f6b80
  Paul McCarthy authored 6 years ago
  
  257f6b80
- RF,ENH: run now accepts a "log" argument, which allows control over where · a34afa7c
  Paul McCarthy authored 6 years ago
  
  stdout/stderr streams go.
  a34afa7c
May 27, 2018
- TEST: Unit test for fsldir/fsldevdir/fsl_prefix · 3738b75f
  Paul McCarthy authored 6 years ago
  
  3738b75f
- RF,ENH: Simplified management of $FSLDIR. Added $FSLDEVDIR. runfsl function · f7bf82cb
  Paul McCarthy authored 6 years ago
  
  gives $FSLDEVDIR precedence, and also allows a global override.
  f7bf82cb
- RF: Many bet parameters were missing. · badd80c8
  Paul McCarthy authored 6 years ago
  
  badd80c8
- RF: Improve test for bytes-vs-str output streams · 5614ce16
  Paul McCarthy authored 6 years ago
  
  5614ce16
- TEST: Test run(tee=True) · 58b22bfb
  Paul McCarthy authored 6 years ago
  
  58b22bfb
- ENH: fsl.utils.run.run now has a "tee" option, which captures process · 8bd3ea7b
  Paul McCarthy authored 6 years ago
  
  stdout/stderr, and also redirects it to real stdout/stderr.
  8bd3ea7b
- TEST: Update image tests for new ndim and data attributes. · e20eaf04
  Paul McCarthy authored 6 years ago
  
  e20eaf04
- RF: Image.ndims renamed to Image.ndim. New Image.data property - easy way to · 482a1290
  Paul McCarthy authored 6 years ago
  
  get image data as numpy array.
  482a1290
May 11, 2018
- Merge branch 'enh/wrappers_support_fsl_image' into 'master' · 0ee48df0
  Paul McCarthy authored 6 years ago
  
  Support fsl data image in wrappers See merge request fsl/fslpy!53
  0ee48df0
- Doc updates · 14b4211d
  Paul McCarthy authored 6 years ago
  
  14b4211d
- TEST: Test for fileOrImage. Fixed parse_data test - depends on FSL · 00eabbe1
  Paul McCarthy authored 6 years ago
  
  00eabbe1
- ENH: fileOrImage works with fsl.data.images. · c68da9a3
  Paul McCarthy authored 6 years ago
  
  c68da9a3
May 03, 2018
- DOC: Changelog · 523b1f6e
  Paul McCarthy authored 6 years ago
  
  523b1f6e
- Merge branch 'bf/label_atlas' into 'master' · 2eb327e9
  Paul McCarthy authored 6 years ago
  
  More label atlas bug fixes See merge request fsl/fslpy!52
  2eb327e9
- TEST: See previous commit · e30b62aa
  Paul McCarthy authored 6 years ago
  
  e30b62aa
- BF: Another fix - label atlas value does not correspond to its index in the · 7aecb004
  Paul McCarthy authored 6 years ago
  
  AtlasDescription.labels list.
  7aecb004