Commits · a95870fe5cd8ed9e27238f81bb83235a173fa7e5 · Michiel Cottaar / fslpy

Dec 12, 2019
- RF: Don't use nibabel get_data method · a95870fe
  Paul McCarthy authored 5 years ago
  
  a95870fe
- RF: ImageWrapper maintains its own internal data cache, rather than relying on · 6f9ecfa5
  Paul McCarthy authored 5 years ago
  
  nibabel
  6f9ecfa5
- MNT: Use %, rather than {} formatting in log calls · d30d7349
  Paul McCarthy authored 5 years ago
  
  d30d7349
Dec 02, 2019
- BF: Fix up adjust method · d92f8e0f
  Paul McCarthy authored 5 years ago
  
  d92f8e0f
Nov 29, 2019
- DOC: clarify · 81cb7c60
  Paul McCarthy authored 5 years ago
  
  81cb7c60
- DOC: update · e3bb0fcf
  Paul McCarthy authored 5 years ago
  
  e3bb0fcf
- ENH: New Nifti.adjust method for adjusting a header shape/pixdim · e4acefd6
  Paul McCarthy authored 5 years ago
  
  e4acefd6
- RF: Deprecated image.resample.calculateMatrrix, moved logic to new · 0c5bb53b
  Paul McCarthy authored 5 years ago
  
  affine.rescale function, for reuse.
  0c5bb53b
Nov 12, 2019
- RF: Allow triangles to be parallel to camera vector · 9c7df3ad
  Paul McCarthy authored 5 years ago
  
  9c7df3ad
Nov 09, 2019
- BF: Make mesh.needsFixing a little more robust? To my knowledge there's no · dbb01513
  Paul McCarthy authored 5 years ago
  
  methoed to do this which is both fast and foolproof
  dbb01513
Nov 03, 2019
- RF,ENH: Move to fsl.utils. New strict option to isBIDSFile, allowing the · 757570af
  Paul McCarthy authored 5 years ago
  
  directory check to be skipped
  757570af
Oct 30, 2019
- ENH,BF: New image.loadMetadata function, and loadMeta option to Image class, to · 44966429
  Paul McCarthy authored 5 years ago
  
  auto-load any JSON files that sre found. Fix to bids.isBIDSFile
  44966429
- ENH: New bids metadata reader. · dedb67a0
  Paul McCarthy authored 5 years ago
  
  dedb67a0
Oct 29, 2019
- MNT: emit warning when dupe image files detected · 284a916f
  Paul McCarthy authored 5 years ago
  
  284a916f
Sep 05, 2019
- ENH: Support old and new dcm2niixes · e58be5f9
  Paul McCarthy authored 5 years ago
  
  e58be5f9
Sep 04, 2019
- RF: Modifications to dicom module to allow version-dependent behaviour. Not tested · 4f7f208c
  Paul McCarthy authored 5 years ago
  
  4f7f208c
Sep 03, 2019
- BF: Handle present but empty elements · 7c72afde
  Paul McCarthy authored 5 years ago
  
  7c72afde
- RF: Update refs to deprecated methods · 40650612
  Paul McCarthy authored 5 years ago
  
  40650612
- ENH: New "binary" flag to LabelAtlas.get · 327d4454
  Paul McCarthy authored 5 years ago
  
  327d4454
- RF: New StatisticAtlas base class, basically the same as the old · 0f31c949
  Paul McCarthy authored 5 years ago
  
  ProbabilisticAtlas. The latter now sub-classes the former.
  0f31c949
- ENH: Support for reading "statistic" xml atlas descriptions · 570a239f
  Paul McCarthy authored 5 years ago
  
  570a239f
Aug 22, 2019
- ENH: Simple Image.iscomplex method · c71c1f4d
  Paul McCarthy authored 5 years ago
  
  c71c1f4d
Jul 30, 2019
- RF: Make vest loader a bit more lenient · 9f204083
  Paul McCarthy authored 5 years ago
  
  9f204083
Jul 23, 2019
- DOC: Additions/fixes · ad726919
  Paul McCarthy authored 5 years ago
  
  ad726919
- BF: Transform->affine changes. Make sure we don't generate an empty affine for · ecbb42bd
  Paul McCarthy authored 5 years ago
  
  coefficient fields
  ecbb42bd
- DOC: Minor tweaks · 554caeff
  Paul McCarthy authored 5 years ago
  
  554caeff
- RF: Moved affine.identify to staticmethod Nifti.identifyAffine · b5a7e362
  Paul McCarthy authored 5 years ago
  
  b5a7e362
- RF: Remove fsl.transform package imports, to remove circular dependency · b53db87d
  Paul McCarthy authored 5 years ago
  
  between fsl.transform.nonlinear and fsl.data.image.
  b53db87d
- DOC: Fixes to docs · 2de38f86
  Paul McCarthy authored 5 years ago
  
  2de38f86
- ENH: Implementation of CoefficientField class, and routine to convert from · 5801a442
  Paul McCarthy authored 5 years ago
  
  coefficient field to displacement field. Check for TOPUP intent codes
  5801a442
- BF: Only FNIRT coefficient fields clobber NIFTI headers - displacement fields · 2f1e421b
  Paul McCarthy authored 5 years ago
  
  are fine. Generating a slightly less incorrect (but still incorrect) v2w affine for the former. Bug in test script
  2f1e421b
- ENH: DisplacementField.transform method · 8053b4c7
  Paul McCarthy authored 5 years ago
  
  8053b4c7
- RF: fsl.utils.trabsform -> fsl.transform · 5987f5b7
  Paul McCarthy authored 5 years ago
  
  5987f5b7
- RF: Don't notify if intent not changed · 4be79280
  Paul McCarthy authored 5 years ago
  
  4be79280
- ENH: Image class has ability to be created from another Image, and allows · 8d03a212
  Paul McCarthy authored 5 years ago
  
  intent code to be changed. Nifti class emits new "header" notifier topic when intent changes.
  8d03a212
- RF: Minor refactorings · 6a70a75b
  Paul McCarthy authored 5 years ago
  
  6a70a75b
- RF: Include identity transforms in image affines. Basic flirt matrix · 30a248dc
  Paul McCarthy authored 5 years ago
  
  read/write routines
  30a248dc
- RF: Changed shape.affine generation methods to be staticmethods, as they may · 9924ee86
  Paul McCarthy authored 5 years ago
  
  be useful outside of the Nifti class (for testing, at least)
  9924ee86
- RF,ENH: Refactor Nifti class - it now pre-calculates affines between voxel, · 0b1b35bb
  Paul McCarthy authored 5 years ago
  
  fsl, and world coordinate systems. New getAffine method allows you to get an affine between any of the coordinate systems
  0b1b35bb
Jul 04, 2019
- BF: Support palette images · f0a7333b
  Paul McCarthy authored 5 years ago
  
  f0a7333b