Commits · f5f631e25c5d5fea025a44bcead9a6c775adffbc · Michiel Cottaar / fslpy · GitLab

Snippets Groups Projects

Feb 04, 2020
- BF: only load bids metadata if image is in bids dir, *and* has a bids filename. · f5f631e2
  Paul McCarthy authored 5 years ago
  
  f5f631e2
Jan 28, 2020
- BF: MGH imagesmay have zooms which don't match their vox2ras affine - make · a127f656
  Paul McCarthy authored 5 years ago
  
  sure the MGHImage class preserves this.
  a127f656
- ENH: New voxToSurfMat, for generating a freesurfer affine for any image. · 25865a2a
  Paul McCarthy authored 5 years ago
  
  25865a2a
Jan 27, 2020
- DOC: note on save method · cfe52385
  Paul McCarthy authored 5 years ago
  
  cfe52385
- MNT: pre-release version bump · 6ad7de9f
  Paul McCarthy authored 5 years ago
  
  6ad7de9f
- BF: wrong data object · 0ab31648
  Paul McCarthy authored 5 years ago
  
  0ab31648
- BF: resample should resample if shapes are different · 5aa2612e
  Paul McCarthy authored 5 years ago
  
  5aa2612e
Jan 25, 2020
- BF: Force mesh indices to be integers. Remove unnecessary Mesh.__new__. · ebd14e27
  Paul McCarthy authored 5 years ago
  
  ebd14e27
Dec 12, 2019
- DOC: clarification · da579bd8
  Paul McCarthy authored 5 years ago
  
  da579bd8
- RF: Adjust Image.save workflow to ensure image data is synced · a040a24f
  Paul McCarthy authored 5 years ago
  
  a040a24f
- MNT: don't use get_data · e6f95d46
  Paul McCarthy authored 5 years ago
  
  e6f95d46
- RF: Don't use get_data · d8231fe2
  Paul McCarthy authored 5 years ago
  
  d8231fe2
- RF: Don't use nibabel get_data method · a95870fe
  Paul McCarthy authored 5 years ago
  
  a95870fe
- RF: ImageWrapper maintains its own internal data cache, rather than relying on · 6f9ecfa5
  Paul McCarthy authored 5 years ago
  
  nibabel
  6f9ecfa5
- MNT: Use %, rather than {} formatting in log calls · d30d7349
  Paul McCarthy authored 5 years ago
  
  d30d7349
Dec 02, 2019
- DOC: typo · 5f31b9e5
  Paul McCarthy authored 5 years ago
  
  5f31b9e5
- RF: Handle case where fslmaths wrapper is passed output=LOAD. Fix/clarify · 7d5e6305
  Paul McCarthy authored 5 years ago
  
  usage docs.
  7d5e6305
- BF: Fix up adjust method · d92f8e0f
  Paul McCarthy authored 5 years ago
  
  d92f8e0f
Nov 29, 2019
- DOC: clarify · 81cb7c60
  Paul McCarthy authored 5 years ago
  
  81cb7c60
- MNT: wrong version · 2da19991
  Paul McCarthy authored 5 years ago
  
  2da19991
- DOC: update · e3bb0fcf
  Paul McCarthy authored 5 years ago
  
  e3bb0fcf
- ENH: New Nifti.adjust method for adjusting a header shape/pixdim · e4acefd6
  Paul McCarthy authored 5 years ago
  
  e4acefd6
- RF: change default handling · 127e2dfd
  Paul McCarthy authored 5 years ago
  
  127e2dfd
- RF: Deprecated image.resample.calculateMatrrix, moved logic to new · 0c5bb53b
  Paul McCarthy authored 5 years ago
  
  affine.rescale function, for reuse.
  0c5bb53b
Nov 12, 2019
- RF: Allow triangles to be parallel to camera vector · 9c7df3ad
  Paul McCarthy authored 5 years ago
  
  9c7df3ad
Nov 09, 2019
- BF: Make mesh.needsFixing a little more robust? To my knowledge there's no · dbb01513
  Paul McCarthy authored 5 years ago
  
  methoed to do this which is both fast and foolproof
  dbb01513
Nov 06, 2019
- MNT: Pre-release version bump · 78f147c4
  Paul McCarthy authored 5 years ago
  
  78f147c4
Nov 05, 2019
- BF: isBIDSFile should return boolean · 33640abf
  Paul McCarthy authored 5 years ago
  
  33640abf
Nov 03, 2019
- RF,ENH: Move to fsl.utils. New strict option to isBIDSFile, allowing the · 757570af
  Paul McCarthy authored 5 years ago
  
  directory check to be skipped
  757570af
Oct 30, 2019
- ENH,BF: New image.loadMetadata function, and loadMeta option to Image class, to · 44966429
  Paul McCarthy authored 5 years ago
  
  auto-load any JSON files that sre found. Fix to bids.isBIDSFile
  44966429
- ENH: New bids metadata reader. · dedb67a0
  Paul McCarthy authored 5 years ago
  
  dedb67a0
Oct 29, 2019
- MNT: emit warning when dupe image files detected · 284a916f
  Paul McCarthy authored 5 years ago
  
  284a916f
Oct 23, 2019
- ENH: New IdleLoop.synchronous context manager which sets/restores the neverQueue · 5a5c22be
  Paul McCarthy authored 5 years ago
  
  flag.
  5a5c22be
Oct 21, 2019
- DOC: Clarify comments about haveGui situation [skip ci] · adcce947
  Paul McCarthy authored 5 years ago
  
  adcce947
- ENH: Global override in idle loop to force all tasks to be called · 0f142411
  Paul McCarthy authored 5 years ago
  
  synchronously
  0f142411
- RF: Reorganised idle loop logic into a single class. Deprecated various · 0d07fa79
  Paul McCarthy authored 5 years ago
  
  module-level functions. No changes to functionality
  0d07fa79
Oct 18, 2019
- RF: Relax Platform.haveGui requirements (temporarily, I hope!) · 9d2eaf34
  Paul McCarthy authored 5 years ago
  
  9d2eaf34
- ENH: idle.block now accepts a conditional function which can control how long · 54879a1f
  Paul McCarthy authored 5 years ago
  
  it blocks for
  54879a1f
Oct 07, 2019
- MNT: Hook in idle module to allow errors to be propagated. Useful for testing. · 2359b49c
  Paul McCarthy authored 5 years ago
  
  2359b49c
Sep 19, 2019
- REF: recalled _prepareArgs as prepareArgs · 806e5dcd
  Michiel Cottaar authored 5 years ago
  
  806e5dcd