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Created with Raphaël 2.2.023Jul171654325Jun2413121031May2621148213Apr1211129Mar19151314Feb86514Jan111087421Dec94330Nov282623221816431Oct242221201918171121Sep1413119715Aug32131Jul181713109824Jun31May3028271132130Apr2726252019181719Mar12DOC: Images for X5 documentation. WIP.BF: Incorrect importTEST: Test coefficient field affineBF: Transform->affine changes. Make sure we don't generate an empty affine forBF: Fix transform/affine importsTEST: Test convertx5 scriptRF,BF: Clean up convertx5 script; fix to fnirtTEST: Tests for x5 moduleBF: Small fixesTEST: Add srcToRef testRF: toFnirt will not convert coefficient fields to displacement fields if itDOC: Minor tweaksBF,RF: FIxes to fnirt/x5TEST: Test identifyAffineRF: Moved affine.identify to staticmethod Nifti.identifyAffineENH: Fleshed out x5 implementationDOC,RF: Still fleshing out spec. Needs a bit more workENH: New affine.identify function, for figuring out what an affineTEST: Fix importsRF: Remove fsl.transform package imports, to remove circular dependencyRF: Push srcToRefMat up to the NonLinearTransform class, so it can also beDOC: Fixes to docsDOC: Fix rstDOC: Notes on X5 formats. Not finished. Other minor doc additionsDOC: typoTEST: More flirt.py unit tests, tests for fnirt.pyTEST: Test CoefField.transformENH: Implmented CoefficientField.transform - just using displacementfieldTEST: Test displacements method, add test data setENH: Finish coefficientFieldToDisplacementField implementation. Add some docsTEST: Move transform test data, add test for coef->disp field conversionRF: Move FSL-specific coefficient field stuff from nonlinear.py into fnirt.pyENH: Implementation of CoefficientField class, and routine to convert fromBF: Only FNIRT coefficient fields clobber NIFTI headers - displacement fieldsBF: Bug in resampleTEST: More comprehensive testing of nonlinear moduleRF,BF: Fixes/adjustments to nonlinear module, and in particular toBF: only add in-bounds coordinatesTEST: Test DispField.transformENH: DisplacementField.transform method