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Created with Raphaël 2.2.023Jul171654325Jun2413121031May2621148213Apr1211129Mar19151314Feb86514Jan111087421Dec94330Nov282623221816431Oct242221201918171121Sep1413119715Aug32131Jul181713109824Jun31May3028271132130Apr272625201918TEST: Test non-voxel-alignedd field+ref combo; adjust altref testBF: Call existent parseVersionString function, as opposed to non-existentRF: Reference image no longer needs to be in the same space as a deformationRF: More sensible initial X5 versionMNT: Include source code in docbuildDOC: Fixes and tweaksMNT: Fix bug in docbuildDOC: Formatting, tweaksMNT: Fix docbuildMNT: Bug in entrypoint specTEST: Unit tests for apply_x5BF: Fix to argument specsTEST: Tests for new resample/nonlinear things. Empty apply_x5 test moduleBF: Can't short-cut convertDeformationType, as it causes inf recursion betweenMNT: fsl_apply_x5 entry pointENH: New fsl_apply_x5 script, to apply a X5 transformation to an imageENH: New function to apply a deformation field. Easier than anticipated.ENH: parse_data.Image allows additional Image.__init__ arguments to beENH: resampleToReference now accepts a custom matrix, allowing us to apply aTEST: Update convert_x5 testsRF: Update convert_x5 scriptTEST: Update transform testsRF,BF: Refactored x5/fnirt modules for new specs - I think the refactoring isRF: Update x5 i/o code to adhere to new spec; fix bug inRF: Minor refactorings; the only real change is that a deformation fieldRF,BK: Change nomenclature in nonlinear module. More to come.DOC: Update documentation. Code is now brokenDOC: stub for convert scriptDOC: Additions/fixesDOC: Tweak x5 figuresDOC: Allow line-wrapping in tablesDOC: More images, referenced in x5.py. Will add more detailsDOC: Images for X5 documentation. WIP.BF: Incorrect importTEST: Test coefficient field affineBF: Transform->affine changes. Make sure we don't generate an empty affine forBF: Fix transform/affine importsTEST: Test convertx5 scriptRF,BF: Clean up convertx5 script; fix to fnirtTEST: Tests for x5 module