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Michiel Cottaar authoredMichiel Cottaar authored
ADCs.jl 2.71 KiB
module ADCs
import JuMP: @constraint
import ...AbstractTypes: ReadoutComponent
import ....BuildSequences: global_model, fixed
import ....Variables: oversample, nsamples, dwell_time, duration, effective_time, resolution, VariableType, apply_simple_constraint!, set_simple_constraints!, get_free_variable, make_generic
"""
ADC(; center_halfway=true, oversample=1, variables...)
Adds a readout event.
## Parameters
- `center_halfway`: by default the `time_to_center` is assumed to be half of the `duration`. Set this to false to disable this assumption.
- `oversample`: by how much the ADC should oversample (default: 2, unless both `resolution` and `nsamples` are set).
## Variables
- `resolution`: number of voxels in the readout direction. This can be a non-integer value during optimisation.
- `nsamples`: number of samples in the readout. This can be a non-integer value during optimisation.
- `dwell_time`: Time between each readout sample in ms.
- `duration`: Total duration of the ADC event in ms.
- `time_to_center`: time till the center of k-space from start of ADC in ms.
- `effective_time`: same as `time_to_center`.
"""
struct ADC <: ReadoutComponent
resolution :: VariableType
dwell_time :: VariableType
time_to_center :: VariableType
oversample :: VariableType
end
function ADC(; resolution=nothing, dwell_time=nothing, time_to_center=nothing, center_halfway=true, oversample=nothing, nsamples=nothing, kwargs...)
if (isnothing(resolution) || isnothing(nsamples)) && isnothing(oversample)
oversample = 2.
end
res = ADC(
get_free_variable(resolution),
get_free_variable(dwell_time),
get_free_variable(time_to_center),
get_free_variable(oversample),
)
@constraint global_model() res.dwell_time >= 0
if center_halfway
apply_simple_constraint!(duration(res), 2 * res.time_to_center)
else
@constraint global_model() res.time_to_center >= 0
@constraint global_model() res.time_to_center <= duration(res)
end
apply_simple_constraint!(res.resolution * res.oversample, nsamples)
set_simple_constraints!(res, kwargs)
return res
end
oversample(adc::ADC) = adc.oversample
nsamples(adc::ADC) = resolution(adc) * oversample(adc)
dwell_time(adc::ADC) = adc.dwell_time
duration(adc::ADC) = (nsamples(adc)-1) * dwell_time(adc)
time_to_center(adc::ADC) = adc.time_to_center
effective_time(adc::ADC) = time_to_center(adc)
resolution(adc::ADC) = adc.resolution
function fixed(adc::ADC)
# round nsamples during fixing
r = Int(round(value(resolution(adc))))
n = Int(round(value(nsamples(adc))))
oversample = n // r
return ADC(r, value(adc.dwell_time), value(adc.time_to_center), oversample)
end
make_generic(adc::ADC) = adc
end