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Commit 98a42cc8 authored by Mohamed Tachrount's avatar Mohamed Tachrount
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Update docs/protocols/protocols_guide_internal-why-use.md

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...@@ -23,22 +23,22 @@ Why you should consider using the WIN MR protocols database to record and share ...@@ -23,22 +23,22 @@ Why you should consider using the WIN MR protocols database to record and share
## Benefits ## Benefits
### Version control ![version-control](../../../img/icon-version-control.png) ### Version control ![version-control](../../../img/icon-version-control.png)
The MR Protocols database is version controlled, so WIN members are invited to upload their protocols during piloting to keep track of optimisation and final versions. Comments and notes can be added to each entry to you can keep well structured documentation about why certain decisions were made. You can also link database entries with acquired data held on the [Open Data](../../data) server The MR Protocols database is version controlled, so WIN members are invited to upload their protocols during piloting to keep track of optimisation and final versions. Comments and notes can be added to each entry so you can keep well structured documentation about why certain decisions were made. You can also link database entries with acquired data held on the [Open Data](../../data) server
### Citable research output ![doi](../../../img/icon-doi.png) ### Citable research output ![doi](../../../img/icon-doi.png)
Versions (with minor and major edits) can be assigned a digital object identified (DOI) using the [Oxford Research Archive (ORA) Data repository](https://deposit.ora.ox.ac.uk) using the stable link provided by the MR Protocols database. Once a DOI has been created, your MR protocol becomes a citable object which you can add to your list of research outputs. Versions (with minor and major edits) can be assigned a digital object identifier (DOI) using the [Oxford Research Archive (ORA) Data repository](https://deposit.ora.ox.ac.uk) using the stable link provided by the MR Protocols database. Once a DOI has been created, your MR protocol becomes a citable object which you can add to your list of research outputs.
### Reproducible methods detail ![reproduce](../../../img/icon-reproduce.png) ### Reproducible methods detail ![reproduce](../../../img/icon-reproduce.png)
Depositing your MR protocol in the database is as simple as uploading the sequence pdf available from the scanner console, or alternatively you can upload the .exar file used by our [Siemens scanners](https://www.win.ox.ac.uk/about/facilities). All sequence detail is captured from either document, and parsed into a unified machine readable and searchable format. You can upload a single sequence, or all sequences used in a single imaging session (a protocol) together. Depositing your MR protocol in the database is as simple as uploading the sequence pdf available from the scanner console, or alternatively you can upload the .exar file used by our [Siemens scanners](https://www.win.ox.ac.uk/about/facilities). Sequences' details are captured from either document and parsed into a unified machine readable and searchable format. You can upload a single sequence or all sequences used in a single imaging session (a protocol) together.
## Who to share MR data acquisition with? ## Who to share MR data acquisition with?
### Yourself and your research group ### Yourself and your research group
The MR Protocols database keeps track of changes to the protocol (for example sequences added, sequences modified in volume or parameters) for best practice in reproducibility and posterity. Maintaining your MR protocol in the database can help you keep an accessible record of what changes were made and why, for your record keeping and communication within your research group. The MR Protocols database keeps track of changes to the protocol (for example added sequences and/or modifed sequences' parameters) for best practice in reproducibility and posterity. Maintaining your MR protocol in the database can help you tp keep an accessible record of what changes have been made and why, for your record keeping and communication within your research group.
### Internally with other WIN members ### Internally with other WIN members
The MR Protocols database provides full and reproducible information about the protocol efficiently, along with details of your decision making process (if used during piloting). You can effective share complete details of your protocol with another scan user. The MR Protocols database provides full and reproducible information about the protocol efficiently, along with details of your decision making process (if used during piloting). In addition, you can effectively share complete details of your protocol with another scan user.
### Externally with other researchers ### Externally with other researchers
...@@ -46,4 +46,4 @@ By using the MR Protocols database: ...@@ -46,4 +46,4 @@ By using the MR Protocols database:
1. You (and the radiographers) receive the credit for this part of the work (you can include citable DOIs) 1. You (and the radiographers) receive the credit for this part of the work (you can include citable DOIs)
2. Makes it easier to share this information with colleagues, potential collaborators, and included as supplementary materials in a publication. 2. Makes it easier to share this information with colleagues, potential collaborators, and included as supplementary materials in a publication.
3. Keeps a reproducible record for your lab of all details and decisions made (version control) 3. Keeps a reproducible record for your lab of all details and decisions made (version control)
4. You contribute to open and reproducible research since other researchers might reuse your MR protocol. This will speed up translation of your research findings and will ultimately increase the impact of your research. 4. You contribute to open and reproducible research because other researchers might reuse your MR protocol. This will speed up translation of your research findings and will ultimately increase the impact of your research.
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