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Commit 0864bae2 authored by Paul McCarthy's avatar Paul McCarthy :mountain_bicyclist:
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TEST: Had two imglob test scripts

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tests/test_imglob.py deleted 100644 → 0
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#!/usr/bin/env python
#
# test_imglob.py -
#
# Author: Paul McCarthy <pauldmccarthy@gmail.com>
#
import pytest
import fsl.scripts.imglob as imglob
from . import testdir
def test_imglob_shouldPass():
# (files to create, paths, output, expected)
tests = [
# normal usage, one file
('file.hdr file.img', 'file', None, 'file'),
('file.hdr file.img', 'file', 'prefix', 'file'),
('file.hdr file.img', 'file', 'primary', 'file.hdr'),
('file.hdr file.img', 'file', 'all', 'file.hdr file.img'),
# incomplete file pair
('file.hdr', 'file', 'prefix', 'file'),
('file.hdr', 'file.hdr', 'prefix', 'file'),
('file.hdr', 'file.img', 'prefix', 'file'),
('file.hdr', 'file', 'primary', 'file.hdr'),
('file.hdr', 'file.hdr', 'primary', 'file.hdr'),
('file.hdr', 'file.img', 'primary', 'file.hdr'),
('file.hdr', 'file', 'all', 'file.hdr'),
('file.hdr', 'file.hdr', 'all', 'file.hdr'),
('file.hdr', 'file.img', 'all', 'file.hdr'),
# same file specified multiple times
('file.hdr file.img', 'file file', 'prefix', 'file'),
('file.hdr file.img', 'file file.img', 'prefix', 'file'),
('file.hdr file.img', 'file file.img file.hdr', 'prefix', 'file'),
('file.hdr file.img', 'file file', 'primary', 'file.hdr'),
('file.hdr file.img', 'file file.img', 'primary', 'file.hdr'),
('file.hdr file.img', 'file file.img file.hdr', 'primary', 'file.hdr'),
('file.hdr file.img', 'file file', 'all', 'file.hdr file.img'),
('file.hdr file.img', 'file file.img', 'all', 'file.hdr file.img'),
('file.hdr file.img', 'file file.img file.hdr', 'all', 'file.hdr file.img'),
# multiple files same prefix
('file.hdr file.img file.nii', 'file', 'prefix', 'file'),
('file.hdr file.img file.nii', 'file', 'primary', 'file.hdr file.nii'),
('file.hdr file.img file.nii', 'file', 'all', 'file.hdr file.img file.nii'),
# multiple files
('file1.hdr file1.img file2.nii', 'file1', 'prefix', 'file1'),
('file1.hdr file1.img file2.nii', 'file1', 'primary', 'file1.hdr'),
('file1.hdr file1.img file2.nii', 'file1', 'all', 'file1.hdr file1.img'),
('file1.hdr file1.img file2.nii', 'file1 file2', 'prefix', 'file1 file2'),
('file1.hdr file1.img file2.nii', 'file1 file2', 'primary', 'file1.hdr file2.nii'),
('file1.hdr file1.img file2.nii', 'file1 file2', 'all', 'file1.hdr file1.img file2.nii'),
# no file
('file.nii', 'bag', 'prefix', ''),
('file.nii', 'bag', 'primary', ''),
('file.nii', 'bag', 'all', ''),
# incomplete prefix
('file.nii', 'fi', 'prefix', ''),
('file.nii', 'fi', 'primary', ''),
('file.nii', 'fi', 'all', ''),
]
for to_create, paths, output, expected in tests:
with testdir(to_create.split()) as td:
paths = paths.split()
expected = expected.split()
result = imglob.imglob(paths, output)
assert sorted(result) == sorted(expected)
def test_imglob_shouldFail():
with pytest.raises(ValueError):
imglob.imglob([], 'bag')
tests/test_scripts/test_imglob.py
+ 78
− 2
View file @ 0864bae2
#!/usr/bin/env python #!/usr/bin/env python
import mock
from unittest import mock
import pytest
import fsl.scripts.imglob as imglob import fsl.scripts.imglob as imglob
...@@ -8,7 +11,7 @@ from .. import testdir ...@@ -8,7 +11,7 @@ from .. import testdir
from .. import CaptureStdout from .. import CaptureStdout
def test_imglob_script_shouldPass(): def test_imglob_shouldPass1():
# (files to create, args, expected) # (files to create, args, expected)
tests = [ tests = [
...@@ -50,8 +53,81 @@ def test_imglob_script_shouldPass(): ...@@ -50,8 +53,81 @@ def test_imglob_script_shouldPass():
assert capture.stdout.strip().split() == expected.split() assert capture.stdout.strip().split() == expected.split()
def test_imglob_shouldPass2():
# (files to create, paths, output, expected)
tests = [
# normal usage, one file
('file.hdr file.img', 'file', None, 'file'),
('file.hdr file.img', 'file', 'prefix', 'file'),
('file.hdr file.img', 'file', 'primary', 'file.hdr'),
('file.hdr file.img', 'file', 'all', 'file.hdr file.img'),
# incomplete file pair
('file.hdr', 'file', 'prefix', 'file'),
('file.hdr', 'file.hdr', 'prefix', 'file'),
('file.hdr', 'file.img', 'prefix', 'file'),
('file.hdr', 'file', 'primary', 'file.hdr'),
('file.hdr', 'file.hdr', 'primary', 'file.hdr'),
('file.hdr', 'file.img', 'primary', 'file.hdr'),
('file.hdr', 'file', 'all', 'file.hdr'),
('file.hdr', 'file.hdr', 'all', 'file.hdr'),
('file.hdr', 'file.img', 'all', 'file.hdr'),
# same file specified multiple times
('file.hdr file.img', 'file file', 'prefix', 'file'),
('file.hdr file.img', 'file file.img', 'prefix', 'file'),
('file.hdr file.img', 'file file.img file.hdr', 'prefix', 'file'),
('file.hdr file.img', 'file file', 'primary', 'file.hdr'),
('file.hdr file.img', 'file file.img', 'primary', 'file.hdr'),
('file.hdr file.img', 'file file.img file.hdr', 'primary', 'file.hdr'),
('file.hdr file.img', 'file file', 'all', 'file.hdr file.img'),
('file.hdr file.img', 'file file.img', 'all', 'file.hdr file.img'),
('file.hdr file.img', 'file file.img file.hdr', 'all', 'file.hdr file.img'),
# multiple files same prefix
('file.hdr file.img file.nii', 'file', 'prefix', 'file'),
('file.hdr file.img file.nii', 'file', 'primary', 'file.hdr file.nii'),
('file.hdr file.img file.nii', 'file', 'all', 'file.hdr file.img file.nii'),
# multiple files
('file1.hdr file1.img file2.nii', 'file1', 'prefix', 'file1'),
('file1.hdr file1.img file2.nii', 'file1', 'primary', 'file1.hdr'),
('file1.hdr file1.img file2.nii', 'file1', 'all', 'file1.hdr file1.img'),
('file1.hdr file1.img file2.nii', 'file1 file2', 'prefix', 'file1 file2'),
('file1.hdr file1.img file2.nii', 'file1 file2', 'primary', 'file1.hdr file2.nii'),
('file1.hdr file1.img file2.nii', 'file1 file2', 'all', 'file1.hdr file1.img file2.nii'),
# no file
('file.nii', 'bag', 'prefix', ''),
('file.nii', 'bag', 'primary', ''),
('file.nii', 'bag', 'all', ''),
# incomplete prefix
('file.nii', 'fi', 'prefix', ''),
('file.nii', 'fi', 'primary', ''),
('file.nii', 'fi', 'all', ''),
]
for to_create, paths, output, expected in tests:
with testdir(to_create.split()) as td:
paths = paths.split()
expected = expected.split()
result = imglob.imglob(paths, output)
assert sorted(result) == sorted(expected)
def test_imglob_script_shouldFail(): def test_imglob_script_shouldFail():
with pytest.raises(ValueError):
imglob.imglob([], 'bag')
capture = CaptureStdout() capture = CaptureStdout()
with capture: with capture:
......
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