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Evan Edmond
fslpy
Commits
d3a75ad7
Commit
d3a75ad7
authored
8 years ago
by
Paul McCarthy
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New Nifti methods to return xyzt unit codes - nibabel returns labels, but I
want the raw codes.
parent
b5f7caa3
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fsl/data/image.py
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d3a75ad7
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@@ -42,7 +42,6 @@ import numpy as np
import
nibabel
as
nib
import
nibabel.fileslice
as
fileslice
import
fsl.utils.transform
as
transform
import
fsl.utils.notifier
as
notifier
import
fsl.utils.memoize
as
memoize
...
...
@@ -314,6 +313,29 @@ class Nifti(notifier.Notifier):
return
self
.
__intent
@property
def
xyzUnits
(
self
):
"""
Returns the NIFTI XYZ dimension unit code.
"""
# The nibabel get_xyzt_units returns labels,
# but we want the NIFTI codes. So we use
# the (undocumented) nifti1.unit_codes field
# to convert back to the raw codes.
xyzUnits
=
self
.
header
.
get_xyzt_units
()[
0
]
xyzUnits
=
nib
.
nifti1
.
unit_codes
[
xyzUnits
]
return
xyzUnits
def
timeUnits
(
self
):
"""
Returns the NIFTI time dimension unit code.
"""
# See xyzUnits
timeUnits
=
self
.
header
.
get_xyzt_units
()[
1
]
timeUnits
=
nib
.
nifti1
.
unit_codes
[
timeUnits
]
return
timeUnits
@property
def
worldToVoxMat
(
self
):
"""
Returns a ``numpy`` array of shape ``(4, 4)`` containing an
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