Commits · a339d71e467c6d135b73a1f8181716e0117dfed6 · Evan Edmond / fslpy · GitLab

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Jul 23, 2019
- ENH: convert_x5 updated to handle non-linear. Nothing is tested · a339d71e
  Paul McCarthy authored 5 years ago
  
  a339d71e
- ENH: New fnirt module for reading/writing fnirt transforms. Expand/clean up · 6154a5b6
  Paul McCarthy authored 5 years ago
  
  nonlinear module. Expand x5 module to handle non-linear. Rename x5 functions to be more generic.
  6154a5b6
- TEST: fsl.utils.transform -> fsl.transform. Re-jigged transform test · 1165eeb9
  Paul McCarthy authored 5 years ago
  
  modules. Fix to mesh test
  1165eeb9
- RF: fsl.utils.trabsform -> fsl.transform · 5987f5b7
  Paul McCarthy authored 5 years ago
  
  5987f5b7
- RF: Shim module at fsl.utils.transform which emits a deprecation warning · a9e396ba
  Paul McCarthy authored 5 years ago
  
  a9e396ba
- TEST: Test deprecated module · 24a0ecb0
  Paul McCarthy authored 5 years ago
  
  24a0ecb0
- ENH: New deprecated.warn function, for directly raising a deprecationwarning. · 7df42bed
  Paul McCarthy authored 5 years ago
  
  7df42bed
- RF: I think transforms is getting big enough to become a second-level package · c07892dd
  Paul McCarthy authored 5 years ago
  
  c07892dd
- TEST: Rename modules/functions in tests, new test for fsl_convert_x5 · e9ebbb4a
  Paul McCarthy authored 5 years ago
  
  e9ebbb4a
- RF: Rename dispfield to nonlinear - best kept all together i think · 172a6490
  Paul McCarthy authored 5 years ago
  
  172a6490
- TEST: Initial tests for dispfield module · 1cd1392f
  Paul McCarthy authored 5 years ago
  
  1cd1392f
- ENH: New dispfield module for working with displacement fields · 175bf746
  Paul McCarthy authored 5 years ago
  
  175bf746
- RF: Don't notify if intent not changed · 4be79280
  Paul McCarthy authored 5 years ago
  
  4be79280
- TEST: Test changing intent property · c9140729
  Paul McCarthy authored 5 years ago
  
  c9140729
- ENH: Image class has ability to be created from another Image, and allows · 8d03a212
  Paul McCarthy authored 5 years ago
  
  intent code to be changed. Nifti class emits new "header" notifier topic when intent changes.
  8d03a212
- TEST: Move some tests around · d27bfa49
  Paul McCarthy authored 5 years ago
  
  d27bfa49
- MNT: New depemdency on h5py · 971a88e8
  Paul McCarthy authored 5 years ago
  
  971a88e8
- DOC: fixes to contributing guide and changelog · 39b59613
  Paul McCarthy authored 5 years ago
  
  39b59613
- RF: Minor refactorings · 6a70a75b
  Paul McCarthy authored 5 years ago
  
  6a70a75b
- MNT: convert script entry point · 8aeb0555
  Paul McCarthy authored 5 years ago
  
  8aeb0555
- ENH: Prototype X5 io module and x5<->flirt converter program. · 599a5de4
  Paul McCarthy authored 5 years ago
  
  599a5de4
- RF: Include identity transforms in image affines. Basic flirt matrix · 30a248dc
  Paul McCarthy authored 5 years ago
  
  read/write routines
  30a248dc
- RF/ENH: transforms module is now a package, with affine, flirt sub-modules · dbaa3029
  Paul McCarthy authored 5 years ago
  
  dbaa3029
- TEST: Unit tests for new Image staticmethods · f9e882b9
  Paul McCarthy authored 5 years ago
  
  f9e882b9
- RF: Changed shape.affine generation methods to be staticmethods, as they may · 9924ee86
  Paul McCarthy authored 5 years ago
  
  be useful outside of the Nifti class (for testing, at least)
  9924ee86
- RF,ENH: Refactor Nifti class - it now pre-calculates affines between voxel, · 0b1b35bb
  Paul McCarthy authored 5 years ago
  
  fsl, and world coordinate systems. New getAffine method allows you to get an affine between any of the coordinate systems
  0b1b35bb
- Merge branch 'enh/roi' into 'master' · 46d1a79f
  Paul McCarthy authored 5 years ago
  
  Enh/roi See merge request fsl/fslpy!143
  46d1a79f
- DOC: Changelog · 7bd56aa5
  Paul McCarthy authored 5 years ago
  
  7bd56aa5
- DOC: Doc for roi module · 12489115
  Paul McCarthy authored 5 years ago
  
  12489115
- TEST: Test roi module · 48b29723
  Paul McCarthy authored 5 years ago
  
  48b29723
- ENH: New image.roi module for extracting image ROI/expanding FOV · b3a82c7b
  Paul McCarthy authored 5 years ago
  
  b3a82c7b
Jul 17, 2019
- Merge branch 'rf/resample_image' into 'master' · e52fc826
  Paul McCarthy authored 5 years ago
  
  Rf/resample image See merge request fsl/fslpy!142
  e52fc826
- DOC: Changelog · 9e8ecb14
  Paul McCarthy authored 5 years ago
  
  9e8ecb14
Jul 16, 2019
- TEST: More tests for resample_image script · d4830e7f
  Paul McCarthy authored 5 years ago
  
  d4830e7f
- RF: Adjust matrix correctly (again) for >3D images. Adjust pixdims of higher · 84bd4950
  Paul McCarthy authored 5 years ago
  
  dimensions
  84bd4950
- TEST: Test resampleToReference with mismatched dimensions · 7d2a83e6
  Paul McCarthy authored 5 years ago
  
  7d2a83e6
- RF: Warn when reference and image are both >3D · aec049f1
  Paul McCarthy authored 5 years ago
  
  aec049f1
- BF: Fix resampling matrix for higher dimensions · 31c3b7af
  Paul McCarthy authored 5 years ago
  
  31c3b7af
- ENH: Support resampling images with more than 3 dimensions · 92466953
  Paul McCarthy authored 5 years ago
  
  92466953
Jul 05, 2019
- Merge branch 'test/idle' into 'master' · 434b82f6
  Paul McCarthy authored 5 years ago
  
  TEST: Fix to idle test See merge request fsl/fslpy!140
  434b82f6