Explore projects
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Michiel Cottaar / gyralcooord
MIT Licensecomputes a gyral coordinate system (as well as many utilities to work with meshes)
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A repo of folders containing Vagrant files that define useful Virtualbox recipes
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B0 Quality Control (bzqc) is a program that determines the best inputs for topup and eddy. It will also create most of the required input files for these tools.
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Code and pipeline for the extraction of fibre dispersion from MDE data
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Talks and Jupyter notebook-based practicals for the 2018 WIN PyTreat
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WIN Information Retrieval Engine
Download open access data sets from popular online repos. Part of WIN's open science initiative.
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Talks, practicals, and other materials for the 2020 WIN PyTreat
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Talks, practicals, and other materials for the 2020 WIN PyTreat
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Taylor Hanayik / fsl_heal
BSD 3-Clause "New" or "Revised" Licenseuse enantiomorphic technique to fill pathological sections of a 3d brain image. Requires a binary mask with ones in areas of damage.
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FSL / strokeseg
BSD 3-Clause "New" or "Revised" Licensestrokeseg is a python package + command line program to identify stroke in clinical brain images.
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Nicole Eichert / project_msm
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Talks, practicals, and other materials for the 2020 WIN PyTreat
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Triplanar U-Net Ensemble model for white matter hyperintensities segmentation
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get a real dataset location from a dataset_loc.txt file in a zenodo repository. Useful for WIN DigitalBrainBank
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