Improvements in run_command

bip/utils/log_utils.py

@@ -22,10 +22,10 @@ from subprocess import check_output
 from fsl import wrappers
 
 
-def run_command(logger, command, env):
+def run_command(logger, command, **kwargs):
     try:
         logger.info('COMMAND TO RUN: \t' + command.strip())
-        job_output = check_output(command, shell=True, env=env).decode('UTF-8')
+        job_output = check_output(command,shell=True,**kawargs).decode('UTF-8')
         logger.info('COMMAND OUTPUT: \t' + job_output.strip())
     except Exception as e:
         logger.error('Exception raised during: \t' + command.strip())