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Commit 22977b54 authored by Stephen Smith's avatar Stephen Smith
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......@@ -106,7 +106,7 @@ be a filename or a directory name depending on the mode.
<h3>Path Distribution Estimation - available modes and mode-specific settings:</h3>
<ul><li><a href="#single">Single seed voxel</a></li>
<li><a href="#seedmask">Seed mask</a></li>
<li><a href="#seedwaypoint">Seed mask and target mask</a></li>
<li><a href="#seedwaypoint">Seed mask and waypoint masks</a></li>
<li><a href="#twomask">Two masks - symmetric </a></li></ul>
<a name="single"></a>
......@@ -116,8 +116,7 @@ be a filename or a directory name depending on the mode.
ALT="simple tract">
Generates a connectivity distribution from a single,
user-specified voxel
<p>Gui Options: <br>Options common to all path distribution estimation
modes are explained <a href="#path">here</a> <br><b>Seeds space:</b>
<p>Gui Options: <br><b>Seeds space:</b>
Enter the x,y,z co-ordinates of a single seed voxel. Use the buttons
to the right to specify whether the co-ordinates are given in voxels
or millimetres. Note if the "seed space is not diffusion" is set, and
......@@ -135,8 +134,7 @@ internal capsule overlaid on an FA image.
<h3>Seed Mask Mode:</h3>
Generates a connectivity distribution from a user-specified
region of interest.
<p>Gui Options: <br>Options common to all path distribution estimation
modes are explained <a href="#path">here</a> <br><b>Seed image:</b>
<p>Gui Options: <br><b>Seed image:</b>
Use the browse button to locate the seed image - this should be a
binary mask. Probabilistic tractography will be run from every voxel
with a value greater than 0 in this mask.
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