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FSL
fdt
Commits
22977b54
Commit
22977b54
authored
20 years ago
by
Stephen Smith
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doc/fdt_probtrack.html
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@@ -106,7 +106,7 @@ be a filename or a directory name depending on the mode.
<h3>
Path Distribution Estimation - available modes and mode-specific settings:
</h3>
<ul><li><a
href=
"#single"
>
Single seed voxel
</a></li>
<li><a
href=
"#seedmask"
>
Seed mask
</a></li>
<li><a
href=
"#seedwaypoint"
>
Seed mask and
targe
t mask
</a></li>
<li><a
href=
"#seedwaypoint"
>
Seed mask and
waypoin
t mask
s
</a></li>
<li><a
href=
"#twomask"
>
Two masks - symmetric
</a></li></ul>
<a
name=
"single"
></a>
...
...
@@ -116,8 +116,7 @@ be a filename or a directory name depending on the mode.
ALT=
"simple tract"
>
Generates a connectivity distribution from a single,
user-specified voxel
<p>
Gui Options:
<br>
Options common to all path distribution estimation
modes are explained
<a
href=
"#path"
>
here
</a>
<br><b>
Seeds space:
</b>
<p>
Gui Options:
<br><b>
Seeds space:
</b>
Enter the x,y,z co-ordinates of a single seed voxel. Use the buttons
to the right to specify whether the co-ordinates are given in voxels
or millimetres. Note if the "seed space is not diffusion" is set, and
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...
@@ -135,8 +134,7 @@ internal capsule overlaid on an FA image.
<h3>
Seed Mask Mode:
</h3>
Generates a connectivity distribution from a user-specified
region of interest.
<p>
Gui Options:
<br>
Options common to all path distribution estimation
modes are explained
<a
href=
"#path"
>
here
</a>
<br><b>
Seed image:
</b>
<p>
Gui Options:
<br><b>
Seed image:
</b>
Use the browse button to locate the seed image - this should be a
binary mask. Probabilistic tractography will be run from every voxel
with a value greater than 0 in this mask.
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