Skip to content
Snippets Groups Projects
Commit 22977b54 authored by Stephen Smith's avatar Stephen Smith
Browse files

*** empty log message ***

parent c151a306
No related branches found
No related tags found
No related merge requests found
...@@ -106,7 +106,7 @@ be a filename or a directory name depending on the mode. ...@@ -106,7 +106,7 @@ be a filename or a directory name depending on the mode.
<h3>Path Distribution Estimation - available modes and mode-specific settings:</h3> <h3>Path Distribution Estimation - available modes and mode-specific settings:</h3>
<ul><li><a href="#single">Single seed voxel</a></li> <ul><li><a href="#single">Single seed voxel</a></li>
<li><a href="#seedmask">Seed mask</a></li> <li><a href="#seedmask">Seed mask</a></li>
<li><a href="#seedwaypoint">Seed mask and target mask</a></li> <li><a href="#seedwaypoint">Seed mask and waypoint masks</a></li>
<li><a href="#twomask">Two masks - symmetric </a></li></ul> <li><a href="#twomask">Two masks - symmetric </a></li></ul>
<a name="single"></a> <a name="single"></a>
...@@ -116,8 +116,7 @@ be a filename or a directory name depending on the mode. ...@@ -116,8 +116,7 @@ be a filename or a directory name depending on the mode.
ALT="simple tract"> ALT="simple tract">
Generates a connectivity distribution from a single, Generates a connectivity distribution from a single,
user-specified voxel user-specified voxel
<p>Gui Options: <br>Options common to all path distribution estimation <p>Gui Options: <br><b>Seeds space:</b>
modes are explained <a href="#path">here</a> <br><b>Seeds space:</b>
Enter the x,y,z co-ordinates of a single seed voxel. Use the buttons Enter the x,y,z co-ordinates of a single seed voxel. Use the buttons
to the right to specify whether the co-ordinates are given in voxels to the right to specify whether the co-ordinates are given in voxels
or millimetres. Note if the "seed space is not diffusion" is set, and or millimetres. Note if the "seed space is not diffusion" is set, and
...@@ -135,8 +134,7 @@ internal capsule overlaid on an FA image. ...@@ -135,8 +134,7 @@ internal capsule overlaid on an FA image.
<h3>Seed Mask Mode:</h3> <h3>Seed Mask Mode:</h3>
Generates a connectivity distribution from a user-specified Generates a connectivity distribution from a user-specified
region of interest. region of interest.
<p>Gui Options: <br>Options common to all path distribution estimation <p>Gui Options: <br><b>Seed image:</b>
modes are explained <a href="#path">here</a> <br><b>Seed image:</b>
Use the browse button to locate the seed image - this should be a Use the browse button to locate the seed image - this should be a
binary mask. Probabilistic tractography will be run from every voxel binary mask. Probabilistic tractography will be run from every voxel
with a value greater than 0 in this mask. with a value greater than 0 in this mask.
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment