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Commit a0cb3532 authored by Stamatios Sotiropoulos's avatar Stamatios Sotiropoulos
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Add grad-nonlinearity option

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bedpostx_preproc.sh
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#!/bin/sh #!/bin/sh
subjdir=$1 subjdir=$1
gflag=$2
echo Copying files to bedpost directory echo Copying files to bedpost directory
cp ${subjdir}/bvecs ${subjdir}/bvals ${subjdir}.bedpostX cp ${subjdir}/bvecs ${subjdir}/bvals ${subjdir}.bedpostX
...@@ -12,4 +13,8 @@ fi ...@@ -12,4 +13,8 @@ fi
${FSLDIR}/bin/fslslice ${subjdir}/data ${FSLDIR}/bin/fslslice ${subjdir}/data
${FSLDIR}/bin/fslslice ${subjdir}/nodif_brain_mask ${FSLDIR}/bin/fslslice ${subjdir}/nodif_brain_mask
if [ ${gflag} -eq 1 ]; then
${FSLDIR}/bin/fslslice ${subjdir}/grad_dev
fi
echo Done echo Done
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