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Commit c8c7e006 authored by Moises Fernandez's avatar Moises Fernandez
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Split dataLR and maskLR after generate them in FILTERING MODE

parent 2c33ff6d
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......@@ -18,6 +18,8 @@ if [ ${filterflag} -eq 1 ]; then
echo "Create Downsampled version of data at ${LowRes} mm isotropic"
${FSLDIR}/bin/flirt -in ${subjdir}/nodif_brain_mask -ref ${subjdir}/nodif_brain_mask -applyisoxfm ${LowRes} -interp nearestneighbour -out ${out_dir}/nodif_brain_maskLR
${FSLDIR}/bin/flirt -in ${subjdir}/data -ref ${subjdir}/data -applyisoxfm ${LowRes} -interp sinc -out ${out_dir}/dataLR
${FSLDIR}/bin/fslslice ${out_dir}/dataLR ${out_dir}/dataLR
${FSLDIR}/bin/fslslice ${out_dir}/$maskLR ${out_dir}/$maskLR
if [ ${gflag} -eq 1 ]; then
echo "Create Downsampled version of grad_dev at ${LowRes} mm isotropic"
${FSLDIR}/bin/flirt -in ${subjdir}/grad_dev -ref ${subjdir}/grad_dev -applyisoxfm ${LowRes} -interp nearestneighbour -out ${out_dir}/grad_devLR
......
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