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FSL
fslpy
Commits
9f3310d4
Commit
9f3310d4
authored
6 years ago
by
Martin Craig
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Special case to handle 'centre' argument for BET since this needs to be
passed as a sequence of CL arguments, not a single value
parent
412dba34
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fsl/wrappers/bet.py
+9
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fsl/wrappers/bet.py
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View file @
9f3310d4
...
@@ -35,6 +35,7 @@ def bet(input, output, **kwargs):
...
@@ -35,6 +35,7 @@ def bet(input, output, **kwargs):
'
robust
'
:
'
R
'
,
'
robust
'
:
'
R
'
,
'
fracintensity
'
:
'
f
'
,
'
fracintensity
'
:
'
f
'
,
'
seg
'
:
'
n
'
,
'
seg
'
:
'
n
'
,
'
centre
'
:
'
c
'
,
}
}
valmap
=
{
valmap
=
{
...
@@ -55,6 +56,14 @@ def bet(input, output, **kwargs):
...
@@ -55,6 +56,14 @@ def bet(input, output, **kwargs):
}
}
cmd
=
[
'
bet
'
,
input
,
output
]
cmd
=
[
'
bet
'
,
input
,
output
]
# The 'centre' argument requires three co-ordinates and can't be passed
# as a single value, so needs to be handled separately. Assume it is
# passed as a Python sequence
centre
=
kwargs
.
pop
(
"
c
"
,
None
)
if
centre
is
not
None
:
cmd
+=
[
'
c
'
,
]
+
list
(
centre
)
cmd
+=
wutils
.
applyArgStyle
(
'
-
'
,
argmap
=
argmap
,
valmap
=
valmap
,
**
kwargs
)
cmd
+=
wutils
.
applyArgStyle
(
'
-
'
,
argmap
=
argmap
,
valmap
=
valmap
,
**
kwargs
)
return
cmd
return
cmd
...
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