Commits · 4866ec808633cc94c35c958c9cb96ef8f3bfaa6f · FSL / fslpy · GitLab

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Mar 20, 2020
- BF: fix wait for single jobid string, make info ignore non-conformant lines · 4866ec80
  Paul McCarthy authored 5 years ago
  
  4866ec80
- Merge branch 'bf/info' into 'master' · 38411970
  Paul McCarthy authored 5 years ago
  
  BF: qstat -j returns non-0 code for non-existent job See merge request fsl/fslpy!209
  38411970
- BF: qstat -j returns non-0 code for non-existent job · 884c3473
  Paul McCarthy authored 5 years ago
  
  884c3473
- Merge branch 'rf/submit' into 'master' · 6a91c938
  Paul McCarthy authored 5 years ago
  
  Rf/submit See merge request fsl/fslpy!208
  6a91c938
- DOC: changelog · 659cb752
  Paul McCarthy authored 5 years ago
  
  659cb752
- TEST: test submit kwargs · 3453131a
  Paul McCarthy authored 5 years ago
  
  3453131a
- RF,ENH: run(submit) args can be passed as a dict or as kwargs. submit accepts · 8d948830
  Paul McCarthy authored 5 years ago
  
  env option
  8d948830
- Merge branch 'bf/fslsub' into 'master' · 6d59ac9e
  Paul McCarthy authored 5 years ago
  
  Bf/fslsub See merge request fsl/fslpy!207
  6d59ac9e
- DOC: changelog · d9de5b15
  Paul McCarthy authored 5 years ago
  
  d9de5b15
- TEST: unit test for info · 8466a171
  Paul McCarthy authored 5 years ago
  
  8466a171
- BF: fixes to info function · f50ff414
  Paul McCarthy authored 5 years ago
  
  f50ff414
Mar 19, 2020
- Merge branch 'rf/wrappers' into 'master' · 54d0e61d
  Paul McCarthy authored 5 years ago
  
  Rf/wrappers See merge request fsl/fslpy!205
  54d0e61d
- DOC: changelog · 56d9ba78
  Paul McCarthy authored 5 years ago
  
  56d9ba78
- TEST: test runfsl with non-fsl command · 3ae5fef8
  Paul McCarthy authored 5 years ago
  
  3ae5fef8
- RF: runfsl errors on non-FSL commands · cc5d6ffc
  Paul McCarthy authored 5 years ago
  
  cc5d6ffc
- TEST: test pass through kwargs to subprocess · a4b3363e
  Paul McCarthy authored 5 years ago
  
  a4b3363e
- DOC: changelog · d84cee2e
  Paul McCarthy authored 5 years ago
  
  d84cee2e
- RF: run function now passes all extra kwargs through to sp.Popen · 184dd60f
  Paul McCarthy authored 5 years ago
  
  184dd60f
Mar 18, 2020
- TEST: more f-strings · 57cb76ed
  Paul McCarthy authored 5 years ago
  
  57cb76ed
- MNT: py38 support · 798eff59
  Paul McCarthy authored 5 years ago
  
  798eff59
- TEST: I still feel obliged to maintain py35 support, so no f-strings · 83302f60
  Paul McCarthy authored 5 years ago
  
  83302f60
- DOC: typo · 744d2475
  Paul McCarthy authored 5 years ago
  
  744d2475
- TEST: test invalid identifiers · d7b766ba
  Paul McCarthy authored 5 years ago
  
  d7b766ba
- RF: update docs, remove unnecessary try:except (setattr accepts invalid identifiers) · 9efdc615
  Paul McCarthy authored 5 years ago
  
  9efdc615
- DOC: changelog · f479040b
  Paul McCarthy authored 5 years ago
  
  f479040b
- TEST: update wrapper tests ("output" -> "stdout"). New test for results · 2a8929a3
  Paul McCarthy authored 5 years ago
  
  attribute access. New test for fileOrText decorator
  2a8929a3
- RF/BF: Update fileOrText decorator to work with input files - they must be · aac90673
  Paul McCarthy authored 5 years ago
  
  specified as pathlib.Path objects, so they can be differentiated from input values.
  aac90673
- RF/ENH: Wrapper outputs are now accessible as attributes in addition to dict · e48be57c
  Paul McCarthy authored 5 years ago
  
  items (where possible). Result standard output renamed from "output" to "stdout".
  e48be57c
- DOC: changelog · 30ed9039
  Paul McCarthy authored 5 years ago
  
  30ed9039
- TEST test applyxfm4D wrapper · 7fa20554
  Paul McCarthy authored 5 years ago
  
  7fa20554
- ENH: new applyxfm4D wrapper · d2f522f6
  Paul McCarthy authored 5 years ago
  
  d2f522f6
- DOC: listen to sphinx warnings · b362fae5
  Paul McCarthy authored 5 years ago
  
  b362fae5
- TEST: Test case for fot submit behaviour · 6a743aa1
  Paul McCarthy authored 5 years ago
  
  6a743aa1
- RF: FileOrThing passes-through if submit=True, and errors if in-memory or LOAD · 4026cbba
  Paul McCarthy authored 5 years ago
  
  is used in conjunction with submit=True
  4026cbba
- DOC: changelog · 60bde1fd
  Paul McCarthy authored 5 years ago
  
  60bde1fd
- TEST: test prelude wrapper · e3fda1ec
  Paul McCarthy authored 5 years ago
  
  e3fda1ec
- ENH: new prelude wrapper · 60ca36b2
  Paul McCarthy authored 5 years ago
  
  60ca36b2
- TEST: fslsub tests · e985dd1f
  Paul McCarthy authored 5 years ago
  
  e985dd1f
- TEST: unit test for prepareArgs · 91315505
  Paul McCarthy authored 5 years ago
  
  91315505
- RF: prepareArgs should use shlex · d7c678c3
  Paul McCarthy authored 5 years ago
  
  d7c678c3