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Commit 67627750 authored by Michiel Cottaar's avatar Michiel Cottaar
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ENH: tests for multi-shell dtifit to the diffusion MRI data

Tests both kurtosis flags (also --wls with --kurt flag)
parent 835ea8c1
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diffusion_multishell
#!/usr/bin/env sh
# Runs dtifit with the --kurt flag on the multi-shell diffusion data
outdir=$1
datadir=$2/diffusion_multishell
dtifit -k ${datadir}/data.nii.gz -b ${datadir}/bvals -r ${datadir}/bvecs -m ${datadir}/nodif_brain_mask -o ${outdir}/kurt --kurt
dtifit -k ${datadir}/data.nii.gz -b ${datadir}/bvals -r ${datadir}/bvecs -m ${datadir}/nodif_brain_mask -o ${outdir}/kurt_wls --kurt --wls
#!/usr/bin/env sh
# Runs dtifit with the --kurt flag on the multi-shell diffusion data
outdir=$1
datadir=$2/diffusion_multishell
dtifit -k ${datadir}/data.nii.gz -b ${datadir}/bvals -r ${datadir}/bvecs -m ${datadir}/nodif_brain_mask -o ${outdir}/kurtdir --kurtdir
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