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Commit 85de1166 authored by Paul McCarthy's avatar Paul McCarthy :mountain_bicyclist:
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New vecreg test for basic/normal usage

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#!/usr/bin/env fslpython
import os
import sys
from pathlib import Path
from fsl.wrappers import vecreg
def main():
fsldir = Path(os.environ['FSLDIR'])
outdir = Path(sys.argv[1])
indir = Path(sys.argv[2])/'fsl_course_data'/'fdt2'
dyads = indir/'subj1.bedpostX'/'dyads1.nii.gz'
std = fsldir/'data'/'standard'/'MNI152_T1_2mm.nii.gz'
diff2std_warp = indir/'subj1.bedpostX'/'xfms'/'diff2standard_warp.nii.gz'
dyads_std = outdir/'dyads1_std.nii.gz'
vecreg(dyads, dyads_std, std, warpfield=diff2std_warp)
if __name__ == '__main__':
main()
......@@ -3,8 +3,6 @@
import os
import sys
sys.path.append('/home/paulmc/Projects/fslpy/')
from pathlib import Path
import numpy as np
......
......@@ -19,8 +19,6 @@ thisdir = op.dirname(op.abspath(__file__))
def compare_images(a, b):
print(f'Comparing images {a} and {b}')
a = fslimage.Image(a)
b = fslimage.Image(b)
adata = a.data
......
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