Commits · 5128f6bc72049c41c1c53b14f4f821ec9916b726 · FSL / pyfeeds-tests · GitLab

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Jan 16, 2024
- BF: expand array when calling fsl_sub · 5128f6bc
  Paul McCarthy authored 2 years ago and Paul McCarthy committed 1 year ago
  
  5128f6bc
- BF: eddy_ is stripped from variant in sed call above · d22725ae
  Paul McCarthy authored 2 years ago and Paul McCarthy committed 1 year ago
  
  d22725ae
- BF: get nthreads from basename, not full executable path · c51427e1
  Paul McCarthy authored 2 years ago and Paul McCarthy committed 1 year ago
  
  c51427e1
- RF: Use an array instead of separate vars for extra arguments · 9fcc45cb
  Paul McCarthy authored 2 years ago and Paul McCarthy committed 1 year ago
  
  9fcc45cb
- RF: Typo in varname. Only request an openmp/multi-core node for --nthr[N>1] · 20ff9ee8
  Paul McCarthy authored 2 years ago and Paul McCarthy committed 1 year ago
  
  20ff9ee8
- MNT: update runEddy script to work with new multi-threaded version. The · 2992cfd1
  Paul McCarthy authored 2 years ago and Paul McCarthy committed 1 year ago
  
  eddy_cpu command is called twice - once with --nthr=1, and again with --nthr=8
  2992cfd1
Aug 22, 2023
- BF: /opt/fmrib/fsl may not contain activate · cf25fd67
  Matthew Webster authored 1 year ago
  
  cf25fd67
- BF: Use fslpython rather than system · 42b24066
  Matthew Webster authored 1 year ago
  
  42b24066
Aug 02, 2023
- TEST: Just creating an OptionParser is not enough, as the OptionParser class · 3cf3083c
  Paul McCarthy authored 1 year ago and Matthew Webster committed 1 year ago
  
  is entirely defined in options.h, and the linker may optimise out libfsl-utils. The usage function is in options.cc though
  3cf3083c
- TEST: Test FSL_SKIP_GLOBAL=0 · 2230c5c4
  Paul McCarthy authored 1 year ago and Matthew Webster committed 1 year ago
  
  2230c5c4
- TEST: MAke sure build env is activated · 94a159f5
  Paul McCarthy authored 1 year ago and Matthew Webster committed 1 year ago
  
  94a159f5
- TEST: Adjust fslstartup test · 0a057f31
  Paul McCarthy authored 1 year ago and Matthew Webster committed 1 year ago
  
  0a057f31
- TEST: Test fslStartup logic · f3f98799
  Paul McCarthy authored 1 year ago and Matthew Webster committed 1 year ago
  
  f3f98799
Aug 01, 2023
- BF: Script tries to remove wait file in pwd not outdir · e3a60b56
  Matthew Webster authored 1 year ago
  
  e3a60b56
Jul 14, 2023
- MNT: Run GPU jobs via fsl_sub, so they can be run locally or on the cluster · 8b2d65cc
  Paul McCarthy authored 1 year ago
  
  8b2d65cc
- MNT: Make scripts executable · 706fd549
  Matthew Webster authored 1 year ago
  
  706fd549
Jul 13, 2023
- TEST: Test for typical/standard MMORF run; needs external/shared data · a9dc2b4c
  Paul McCarthy authored 1 year ago
  
  View commits for tag 2307.0 2307.0
  
  a9dc2b4c
Jun 26, 2023
- Remove avwutils unit tests - they have been added to the fsl/avwutils project · 5fa576c1
  Paul McCarthy authored 1 year ago
  
  5fa576c1
Feb 01, 2023
- RF: originalFeeds already exists in /vols/Data/fsldev/dataSets/ · bd7bc0bd
  Paul McCarthy authored 2 years ago
  
  View commits for tag 2302.0 2302.0
  
  bd7bc0bd
- TEST: New pyfeeds test for old feeds tests. Relies on "old_feeds" external data · 107af3a1
  Paul McCarthy authored 2 years ago
  
  107af3a1
Jan 31, 2023
- RF: Usage incompatible wtih macOS version of sed · 5a172e5b
  Paul McCarthy authored 2 years ago
  
  View commits for tag 2301.0 2301.0
  
  5a172e5b
- MNT: Fixes to a few feedsRun scripts · d33157ba
  Paul McCarthy authored 2 years ago
  
  d33157ba
Oct 20, 2022
- BF: Changes for 6.0.6 · 6fca5689
  Matthew Webster authored 2 years ago
  
  6fca5689
Oct 17, 2022
- avscale unit test · 40457d8a
  Paul McCarthy authored 2 years ago
  
  View commits for tag 2210.0 2210.0
  
  40457d8a
Oct 15, 2022
- MNT: New path for flobs data · 171b3e88
  Matthew Webster authored 2 years ago
  
  171b3e88
Oct 14, 2022
- BF: 1st arg is outdir · a2475ab6
  Matthew Webster authored 2 years ago
  
  a2475ab6
- BF: feedsRun writing to test directory, not output directory · eab4b1bd
  Matthew Webster authored 2 years ago
  
  eab4b1bd
- BF: feedsRun writing to test directory, not output directory · 8f2af1f9
  Matthew Webster authored 2 years ago
  
  8f2af1f9
Sep 09, 2022
- TEST: use fixed seed; make radio/neuro images world-aligned for convenience · de52f06b
  Paul McCarthy authored 2 years ago
  
  de52f06b
Sep 07, 2022
- TEST: unit test for fslcomplex · d2737324
  Paul McCarthy authored 2 years ago
  
  d2737324
Aug 24, 2022
- TEST: check data has been rotated as well · 2c3d0aa8
  Paul McCarthy authored 2 years ago
  
  2c3d0aa8
- TEST: Test standard recipe for fixing image orientation. Note that this recipe · 90fe4b4f
  Paul McCarthy authored 2 years ago
  
  is broken in FSL 6.0.0-6.0.5.2, due to issues with fslorient/fslswapdim. Also test an alternate recipe which should work across all FSL versions
  90fe4b4f
Jul 25, 2022
- Test that applywarp --usesqform adheres to FSL sform/qform usage · e3a4f76b
  Paul McCarthy authored 2 years ago
  
  conventions.
  View commits for tag 2208.0 2208.0
  
  e3a4f76b
Mar 19, 2022
- BF: Works for both queue and local invocation · 7d196a78
  Matthew Webster authored 3 years ago and Matthew Webster committed 3 years ago
  
  7d196a78
- BF: feedsRun was unsetting SGE_ROOT causing new fsl_sub to fail · dd3e1bc5
  Matthew Webster authored 3 years ago and Matthew Webster committed 3 years ago
  
  dd3e1bc5
Mar 17, 2022
- BF: Keep track of which jobs were submitted, so we know what outputs to expect · b05c75a6
  Paul McCarthy authored 3 years ago
  
  View commits for tag 2203.1 2203.1
  
  b05c75a6
- RF: use new fsl_sub syntax · 4f591f23
  Paul McCarthy authored 3 years ago
  
  View commits for tag 2203.0 2203.0
  
  4f591f23
- MNT: Allow fsl_sub to fail, e.g. when trying to run eddy_cuda on a non-cuda · f881b286
  Paul McCarthy authored 3 years ago
  
  machine. Save runEddy output to file so we can inspect it on failures
  f881b286
- MNT: need hash bang · d1192a98
  Paul McCarthy authored 3 years ago
  
  d1192a98
Nov 25, 2021
- BF: Wrong variable name · 38f8b08e
  Paul McCarthy authored 3 years ago
  
  View commits for tag 2111.0 2111.0
  
  38f8b08e