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Make eddy tests runnable in non-SGE environments

Merged Paul McCarthy requested to merge rf/eddy_without_sge into master
11 files
+ 270
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@@ -31,10 +31,10 @@ class EddyHigh_b_FeedsType(object):
@@ -31,10 +31,10 @@ class EddyHigh_b_FeedsType(object):
# Compare images and create statistics of differences
# Compare images and create statistics of differences
try:
try:
mask = self._mask.get_data().astype(float)
mask = self._mask.get_fdata()
mask = (mask > 0).astype(float)
mask = (mask > 0).astype(float)
corrdiff = self._corr.get_data().astype(float)
corrdiff = self._corr.get_fdata()
corrdiff = abs(corrdiff - self._precomp_corr.get_data().astype(float))
corrdiff = abs(corrdiff - self._precomp_corr.get_fdata())
self._corrdiffmeans = np.zeros(corrdiff.shape[3])
self._corrdiffmeans = np.zeros(corrdiff.shape[3])
for vol in range(0, corrdiff.shape[3]):
for vol in range(0, corrdiff.shape[3]):
@@ -131,4 +131,4 @@ def main(argv):
@@ -131,4 +131,4 @@ def main(argv):
if __name__ == "__main__":
if __name__ == "__main__":
main(sys.argv)
main(sys.argv)
\ No newline at end of file
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