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Michiel Cottaar
fslpy
Commits
c04931e4
Commit
c04931e4
authored
5 years ago
by
Paul McCarthy
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RF: Use new resample module
parent
d9f52108
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fsl/data/atlases.py
+3
-3
3 additions, 3 deletions
fsl/data/atlases.py
with
3 additions
and
3 deletions
fsl/data/atlases.py
+
3
−
3
View file @
c04931e4
...
@@ -53,6 +53,7 @@ import numpy as np
...
@@ -53,6 +53,7 @@ import numpy as np
import
fsl.data.image
as
fslimage
import
fsl.data.image
as
fslimage
import
fsl.data.constants
as
constants
import
fsl.data.constants
as
constants
from
fsl.utils.platform
import
platform
as
platform
from
fsl.utils.platform
import
platform
as
platform
import
fsl.utils.image.resample
as
resample
import
fsl.utils.transform
as
transform
import
fsl.utils.transform
as
transform
import
fsl.utils.notifier
as
notifier
import
fsl.utils.notifier
as
notifier
import
fsl.utils.settings
as
fslsettings
import
fsl.utils.settings
as
fslsettings
...
@@ -695,9 +696,8 @@ class Atlas(fslimage.Image):
...
@@ -695,9 +696,8 @@ class Atlas(fslimage.Image):
# for resampling, as it is most likely
# for resampling, as it is most likely
# that the mask is binary.
# that the mask is binary.
try
:
try
:
mask
,
xform
=
mask
.
resample
(
self
.
shape
[:
3
],
mask
,
xform
=
resample
.
resample
(
dtype
=
np
.
float32
,
mask
,
self
.
shape
[:
3
],
dtype
=
np
.
float32
,
order
=
0
)
order
=
0
)
except
ValueError
:
except
ValueError
:
raise
MaskError
(
'
Mask has wrong number of dimensions
'
)
raise
MaskError
(
'
Mask has wrong number of dimensions
'
)
...
...
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