Commits · 6d81664a7739ae156f4d26f4c3c97f16a63c8109 · FSL / BIP · GitLab

Snippets Groups Projects

Jun 16, 2023
- Small fixes · 6d81664a
  Fidel Alfaro Almagro authored 1 year ago
  
  6d81664a
Apr 12, 2023
- Updating the code to use fsl-pipe instead of pipe-tree · 099d2b15
  Fidel Alfaro Almagro authored 1 year ago
  
  099d2b15
Mar 27, 2023
- Fixing bugs that were giving different results in the report · d9716d1d
  Fidel Alfaro Almagro authored 1 year ago
  
  d9716d1d
Mar 24, 2023
- Correcing bugs related to IDP generation · 8974379b
  Fidel Alfaro Almagro authored 1 year ago
  
  8974379b
Mar 21, 2023
- Fixing new small bugs · 057aa33f
  Fidel Alfaro Almagro authored 1 year ago
  
  057aa33f
- Fix small bugs · 33a75e48
  Fidel Alfaro Almagro authored 1 year ago
  
  33a75e48
Mar 20, 2023
- Fixing small bugs · a09416af
  Fidel Alfaro Almagro authored 1 year ago
  
  a09416af
Mar 17, 2023
- Sorting out some inconsistencies · 0527049f
  Fidel Alfaro Almagro authored 2 years ago
  
  0527049f
- Fixing bug in ASL · f3219c52
  Fidel Alfaro Almagro authored 2 years ago
  
  f3219c52
- Fixing small bugs and generalizing a bit more · 52125b15
  Fidel Alfaro Almagro authored 2 years ago
  
  52125b15
Mar 16, 2023
- Allowing configuration of cuda parameters · 03dd0b54
  Fidel Alfaro Almagro authored 2 years ago
  
  03dd0b54
- Scmall change in the acqparam generation function · ec6ca756
  Fidel Alfaro Almagro authored 2 years ago
  
  ec6ca756
- Making the diffusion more flexible · 3b25d24e
  Fidel Alfaro Almagro authored 2 years ago
  
  3b25d24e
- Improving the configuration use and also the acqparams generation for topup · 9d42ab86
  Fidel Alfaro Almagro authored 2 years ago
  
  9d42ab86
- Merge branch 'mnt/config-pickleable' into 'master' · 0bc8e38b
  Fidel Alfaro Almagro authored 2 years ago
  
  MNT: Make config objects pickleable See merge request falmagro/bip!5
  0bc8e38b
- TEST: test pickleability of Config objects. Make sure FSLDIR is set when · 33dbfd22
  Paul McCarthy authored 2 years ago and Fidel Alfaro Almagro committed 2 years ago
  
  running Context test
  33dbfd22
- MNT: Make sure __settings is created before any access - this allows Config · 5ac6ef8c
  Paul McCarthy authored 2 years ago and Fidel Alfaro Almagro committed 2 years ago
  
  objects to be [un]pickleable
  5ac6ef8c
- Small changes · 779bab65
  Fidel Alfaro Almagro authored 2 years ago
  
  779bab65
- Allowung user to specify a config file · 5c0538bc
  Fidel Alfaro Almagro authored 2 years ago
  
  5c0538bc
- Fixing FreeSurfer code and refactoring · 0208f98b
  Fidel Alfaro Almagro authored 2 years ago
  
  0208f98b
- Adjusting to PEP8 syntax · f8551f9d
  Fidel Alfaro Almagro authored 2 years ago
  
  f8551f9d
Mar 10, 2023
- Merge branch 'enh/use-vars-in-config' into 'master' · f51bf98d
  Fidel Alfaro Almagro authored 2 years ago
  
  ENH: Config file templating See merge request falmagro/bip!4
  f51bf98d
- CI: gradunwarp now on conda; run clean/purge to save a bit of space · 0b0db4fd
  Paul McCarthy authored 2 years ago
  
  0b0db4fd
- DOC: Config.__init__ · 85284159
  Paul McCarthy authored 2 years ago
  
  85284159
- CI: need compiler · 8176ecdb
  Paul McCarthy authored 2 years ago
  
  8176ecdb
- CI: update docker file paths in CI config · b8b22c10
  Paul McCarthy authored 2 years ago
  
  b8b22c10
- CI: Rename to .docker; unit test no longer calls create_dev_env · 391c11a8
  Paul McCarthy authored 2 years ago
  
  391c11a8
- TEST: Minimal Context sanity check test · 8dba56b9
  Paul McCarthy authored 2 years ago
  
  8dba56b9
- CI: Pre-build docker image for make testing faster · 0559b7a6
  Paul McCarthy authored 2 years ago
  
  0559b7a6
- CI: Make CI scripts executable, fix bug in call to create_dev_env · 2f3f7a5f
  Paul McCarthy authored 2 years ago
  
  2f3f7a5f
- BF: Fix BIPDIR access · 736fc30d
  Paul McCarthy authored 2 years ago
  
  736fc30d
- BF: strings need to be quoted · 598e7e26
  Paul McCarthy authored 2 years ago
  
  598e7e26
- CI: install gradunwarp (no conda package yet) · 9b0303d7
  Paul McCarthy authored 2 years ago
  
  9b0303d7
- RF: Context passes BIPDIR/FSLDIR to Config constructor · 57f2af49
  Paul McCarthy authored 2 years ago
  
  57f2af49
- RF: Allow passing env when creating Config · 6ce08844
  Paul McCarthy authored 2 years ago
  
  6ce08844
- CI: Install some more dependencies in CI env · 206b59e3
  Paul McCarthy authored 2 years ago
  
  206b59e3
- RF: Make Context sub-class from Config, and a few associated changes · b29ea4d2
  Paul McCarthy authored 2 years ago
  
  b29ea4d2
- TEST: test config file templating, and attribute assignment restriction · d0cba1fc
  Paul McCarthy authored 2 years ago
  
  d0cba1fc
- RF: Disallow overwriting config settings via python attribute assignment · 74b21b0e
  Paul McCarthy authored 2 years ago
  
  74b21b0e
- ENH: Run config files through jinja, so we can inject variables (e.g. FSLDIR, · 7f8a7a93
  Paul McCarthy authored 2 years ago
  
  BIPDIR, etc)
  7f8a7a93