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Commit 24b79fde authored by Stamatios Sotiropoulos's avatar Stamatios Sotiropoulos
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Now save meanS0 and meantau

parent a33476e3
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......@@ -27,13 +27,24 @@ done
if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_dsamples` -eq 1 ];then
${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_dsamples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_dsamples*`
fi
if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_d_stdsamples` -eq 1 ];then
${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_d_stdsamples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_d_stdsamples*`
fi
if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_f0samples` -eq 1 ];then
${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_f0samples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_f0samples*`
fi
if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_S0samples` -eq 1 ];then
${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_S0samples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_S0samples*`
fi
if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_tausamples` -eq 1 ];then
${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_tausamples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_tausamples*`
fi
echo Removing intermediate files
if [ `imtest ${subjdir}.bedpostX/merged_th1samples` -eq 1 ];then
......
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