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Commit 85d58b7f authored by Stephen Smith's avatar Stephen Smith
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fixed bug - added full path to avwval call
parent 8e77d97e
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...@@ -152,7 +152,7 @@ ${FSLDIR}/bin/avwmaths ${subjdir}/nodif -mas ${subjdir}/nodif_brain_mask ${subjd ...@@ -152,7 +152,7 @@ ${FSLDIR}/bin/avwmaths ${subjdir}/nodif -mas ${subjdir}/nodif_brain_mask ${subjd
mkdir -p ${subjdir}.bedpost/logs mkdir -p ${subjdir}.bedpost/logs
mkdir -p ${subjdir}.bedpost/logs/pid_${$} mkdir -p ${subjdir}.bedpost/logs/pid_${$}
nslices=`avwval ${subjdir}/data dim3` nslices=`${FSLDIR}/bin/avwval ${subjdir}/data dim3`
${FSLDIR}/bin/avwslice ${subjdir}/data ${FSLDIR}/bin/avwslice ${subjdir}/data
${FSLDIR}/bin/avwslice ${subjdir}/nodif_brain_mask ${FSLDIR}/bin/avwslice ${subjdir}/nodif_brain_mask
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