Commits · 8c5f54fbda74b7943ffd09a9629a03ff204a7345 · FSL / fslpy · GitLab

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Jul 10, 2018
- Remove all standard keyword argument and pass them to the run function separately · 8c5f54fb
  Martin Craig authored 6 years ago
  
  8c5f54fb
- Allow subclasses of Image (and Nifti1Image) to be passed as parameters · c3a9ebac
  Martin Craig authored 6 years ago
  
  c3a9ebac
- Add singlechar_args option to applyArgStyle for standard handling of single-char arguments · ca547bee
  Martin Craig authored 6 years ago
  
  If specified, single-character arguments always take single dash prefix even if argument style is --. This is a standard variation.
  ca547bee
- Add kwargs to applyxfm wrapper - required for logging options · fb10710f
  Martin Craig authored 6 years ago
  
  fb10710f
Jun 04, 2018
- Merge branch 'maint/post-release' into 'master' · ac3fd5c1
  Paul McCarthy authored 6 years ago
  
  Maint/post release See merge request fsl/fslpy!57
  ac3fd5c1
- MAINT: Post-release version bump · 1d880f3c
  Paul McCarthy authored 6 years ago
  
  1d880f3c
- DOC: Changelog · 6b89fd1c
  Paul McCarthy authored 6 years ago
  
  6b89fd1c
May 31, 2018
- Merge branch 'bf/deprecated_ndims' into 'master' · 2fea8224
  Paul McCarthy authored 6 years ago
  
  BF: Image.ndims (deprecated) was broken See merge request fsl/fslpy!56
  2fea8224
- TEST: Test Image.ndims · ae568f64
  Paul McCarthy authored 6 years ago
  
  ae568f64
- BF: Image.ndims (deprecated) was broken · 2955607c
  Paul McCarthy authored 6 years ago
  
  2955607c
- Merge branch 'maint/conda_deploy' into 'master' · e6eae8f7
  Paul McCarthy authored 6 years ago
  
  Maint/conda deploy See merge request fsl/fslpy!55
  e6eae8f7
- CI: Make pip retry failed downloads. · 1e3a470d
  Paul McCarthy authored 6 years ago
  
  1e3a470d
- MAINT: Infrastructure to update conda channel after deploy · b0a2c67f
  Paul McCarthy authored 6 years ago
  
  b0a2c67f
May 30, 2018
- Merge branch 'rf/wrapper_updates' into 'master' · d4c36b80
  Paul McCarthy authored 6 years ago
  
  Rf/wrapper updates See merge request fsl/fslpy!54
  d4c36b80
- DOC: Changelog · d9a43461
  Paul McCarthy authored 6 years ago
  
  d9a43461
- BF: Forgot property decorator on Image.ndim · f9904a56
  Paul McCarthy authored 6 years ago
  
  f9904a56
May 28, 2018
- TEST: mockFSLDIR helper function clobbers fsldevdir · 5d842760
  Paul McCarthy authored 6 years ago
  
  5d842760
- RF: Changed default stream handling for cmdwrapper/fslwrapper decorators · 3c7bff49
  Paul McCarthy authored 6 years ago
  
  3c7bff49
- TEST: Expanded run module unit tests · 257f6b80
  Paul McCarthy authored 6 years ago
  
  257f6b80
- RF,ENH: run now accepts a "log" argument, which allows control over where · a34afa7c
  Paul McCarthy authored 6 years ago
  
  stdout/stderr streams go.
  a34afa7c
May 27, 2018
- TEST: Unit test for fsldir/fsldevdir/fsl_prefix · 3738b75f
  Paul McCarthy authored 6 years ago
  
  3738b75f
- RF,ENH: Simplified management of $FSLDIR. Added $FSLDEVDIR. runfsl function · f7bf82cb
  Paul McCarthy authored 6 years ago
  
  gives $FSLDEVDIR precedence, and also allows a global override.
  f7bf82cb
- RF: Many bet parameters were missing. · badd80c8
  Paul McCarthy authored 6 years ago
  
  badd80c8
- RF: Improve test for bytes-vs-str output streams · 5614ce16
  Paul McCarthy authored 6 years ago
  
  5614ce16
- TEST: Test run(tee=True) · 58b22bfb
  Paul McCarthy authored 6 years ago
  
  58b22bfb
- ENH: fsl.utils.run.run now has a "tee" option, which captures process · 8bd3ea7b
  Paul McCarthy authored 6 years ago
  
  stdout/stderr, and also redirects it to real stdout/stderr.
  8bd3ea7b
- TEST: Update image tests for new ndim and data attributes. · e20eaf04
  Paul McCarthy authored 6 years ago
  
  e20eaf04
- RF: Image.ndims renamed to Image.ndim. New Image.data property - easy way to · 482a1290
  Paul McCarthy authored 6 years ago
  
  get image data as numpy array.
  482a1290
May 11, 2018
- Merge branch 'enh/wrappers_support_fsl_image' into 'master' · 0ee48df0
  Paul McCarthy authored 6 years ago
  
  Support fsl data image in wrappers See merge request fsl/fslpy!53
  0ee48df0
- Doc updates · 14b4211d
  Paul McCarthy authored 6 years ago
  
  14b4211d
- TEST: Test for fileOrImage. Fixed parse_data test - depends on FSL · 00eabbe1
  Paul McCarthy authored 6 years ago
  
  00eabbe1
- ENH: fileOrImage works with fsl.data.images. · c68da9a3
  Paul McCarthy authored 6 years ago
  
  c68da9a3
May 03, 2018
- DOC: Changelog · 523b1f6e
  Paul McCarthy authored 6 years ago
  
  523b1f6e
- Merge branch 'bf/label_atlas' into 'master' · 2eb327e9
  Paul McCarthy authored 6 years ago
  
  More label atlas bug fixes See merge request fsl/fslpy!52
  2eb327e9
- TEST: See previous commit · e30b62aa
  Paul McCarthy authored 6 years ago
  
  e30b62aa
- BF: Another fix - label atlas value does not correspond to its index in the · 7aecb004
  Paul McCarthy authored 6 years ago
  
  AtlasDescription.labels list.
  7aecb004
- Merge branch 'test/new_atlas' into 'master' · 670630ec
  Paul McCarthy authored 6 years ago
  
  Updates to atlases See merge request fsl/fslpy!51
  670630ec
- MAINT: CONDA_CHANNELS is an undocumented variable used by conda. · 1198b13e
  Paul McCarthy authored 6 years ago
  
  1198b13e
- TEST: Fixed broken assumptions (see previous commit) · 7a1bf04e
  Paul McCarthy authored 6 years ago
  
  7a1bf04e
- BF: Fixed invalid assumptions: · 801b6b7c
  Paul McCarthy authored 6 years ago
  
  - not all atlases have a 2mm version - label atlas value does not correspond to its index in the AtlasDescription.labels list.
  801b6b7c