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Commit dfba6a06 authored by Stephen Smith's avatar Stephen Smith
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changed mcflirt fsl:exec call
parent d4d2845b
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......@@ -506,7 +506,7 @@ if { $fmri(st) > 0 } {
#{{{ motion correction
if { $fmri(mc) != 0 } {
fsl:exec "${FSLDIR}/bin/mcflirt -in $INPUT -out prefiltered_func_data_mcf -refvol $target_vol_number" C
fsl:exec "${FSLDIR}/bin/mcflirt -in $INPUT -out prefiltered_func_data_mcf -refvol $target_vol_number" -r
set INPUT prefiltered_func_data_mcf
}
......
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