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Commit 171b3e88 authored by Matthew Webster's avatar Matthew Webster
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MNT: New path for flobs data

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Stage: fsl-ci-build
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fsl_course/feat3/feedsRun5.py
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...@@ -24,6 +24,12 @@ newFSF = op.join(outDir, "design.fsf") ...@@ -24,6 +24,12 @@ newFSF = op.join(outDir, "design.fsf")
cmd = "./cleanFSF.py {0} {1} {2} {3} {4} {5}".format(origFSF, newFSF, origDataDir, dataDir, outDir, origFSLDir) cmd = "./cleanFSF.py {0} {1} {2} {3} {4} {5}".format(origFSF, newFSF, origDataDir, dataDir, outDir, origFSLDir)
utils.run(cmd) utils.run(cmd)
# For conda version, default_flobs.flobs is in new location
cmd = f'''sed -i 's,etc,data/feat5,g' {newFSF}'''
utils.run(cmd)
# run FEAT # run FEAT
utils.run("unset SGE_ROOT; feat {0}".format(op.join(outDir, "design.fsf"))) utils.run("unset SGE_ROOT; feat {0}".format(op.join(outDir, "design.fsf")))
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