Skip to content
Snippets Groups Projects
Commit e17d175a authored by Matthew Webster's avatar Matthew Webster
Browse files

BF: Second test should be for eddy not eddy_openmp

parent 9989502b
No related branches found
No related tags found
1 merge request!27BF: Second test should be for eddy not eddy_openmp
Hide whitespace changes
Inline Side-by-side
fsl_course/fdt1/test_topup_eddy.sh
+ 1
− 1
View file @ e17d175a
...@@ -41,7 +41,7 @@ if which eddy_openmp &> /dev/null; then ...@@ -41,7 +41,7 @@ if which eddy_openmp &> /dev/null; then
--bvecs=$subdatadir/bvecs --bvals=$subdatadir/bvals \ --bvecs=$subdatadir/bvecs --bvals=$subdatadir/bvals \
--fwhm=0 --topup=$outdir/topup_AP_PA_b0 --flm=quadratic \ --fwhm=0 --topup=$outdir/topup_AP_PA_b0 --flm=quadratic \
--out=$outdir/eddy_unwarped_images & sleep 10; kill -TERM $! --out=$outdir/eddy_unwarped_images & sleep 10; kill -TERM $!
elif which eddy_openmp &> /dev/null; then elif which eddy &> /dev/null; then
eddy --imain=$subdatadir/dwidata --mask=$outdir/hifi_nodif_brain_mask \ eddy --imain=$subdatadir/dwidata --mask=$outdir/hifi_nodif_brain_mask \
--index=$subdatadir/index.txt --acqp=$subdatadir/acqparams.txt \ --index=$subdatadir/index.txt --acqp=$subdatadir/acqparams.txt \
--bvecs=$subdatadir/bvecs --bvals=$subdatadir/bvals \ --bvecs=$subdatadir/bvecs --bvals=$subdatadir/bvals \
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment