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Commit ee2d9375 authored by Matthew Webster's avatar Matthew Webster Committed by Matthew Webster
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BF: Original paths/files don't exist in our datasets

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...@@ -19,11 +19,11 @@ def main(): ...@@ -19,11 +19,11 @@ def main():
fsldir = Path(os.environ['FSLDIR']) fsldir = Path(os.environ['FSLDIR'])
outdir = Path(sys.argv[1]) outdir = Path(sys.argv[1])
indir = Path(sys.argv[2])/'fsl_course_data'/'fdt2' indir = Path(sys.argv[2])/'fsl_course_data'/'fdt2'
dyads = indir/'diffusion.bedpostX'/'dyads1.nii.gz' dyads = indir/'subj1.bedpostX'/'dyads1.nii.gz'
std = fsldir/'data'/'standard'/'MNI152_T1_2mm.nii.gz' std = fsldir/'data'/'standard'/'MNI152_T1_2mm.nii.gz'
str2std = indir/'diffusion.bedpostX'/'xfms'/'str2standard.mat' str2std = indir/'subj1.bedpostX'/'xfms'/'str2standard.mat'
diff2str = indir/'structural'/'xfms'/'diff2str.mat' diff2str = indir/'subj1.bedpostX'/'xfms'/'diff2str.mat'
diff2std_warp = indir/'structural'/'xfms'/'diff2standard_warp.nii.gz' diff2std_warp = indir/'subj1.bedpostX'/'xfms'/'diff2standard_warp.nii.gz'
# Create diff2std/std2diff affines # Create diff2std/std2diff affines
std2diff = outdir/'std2diff.mat' std2diff = outdir/'std2diff.mat'
......
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