Commits · 570a239fae3d5aeb818d558019e371cf5e117f6a · Michiel Cottaar / fslpy

Jul 24, 2019
- RF: Tweaks to x5 scripts · 1587e85a
  Paul McCarthy authored 5 years ago
  
  1587e85a
- RF: Let argparse decide whether args are invalid · a53e041f
  Paul McCarthy authored 5 years ago
  
  a53e041f
Jul 23, 2019
- RF: Print help on no-args · 3aef4975
  Paul McCarthy authored 5 years ago
  
  3aef4975
- RF: Warning message for convert/apply_x5 · 74812ead
  Paul McCarthy authored 5 years ago
  
  74812ead
- BF: Fix to argument specs · 15603d98
  Paul McCarthy authored 5 years ago
  
  15603d98
- ENH: New fsl_apply_x5 script, to apply a X5 transformation to an image · 309da951
  Paul McCarthy authored 5 years ago
  
  309da951
- ENH: parse_data.Image allows additional Image.__init__ arguments to be · 65a51503
  Paul McCarthy authored 5 years ago
  
  passed. Used by fsl_convert_x5
  65a51503
- RF: Update convert_x5 script · 54f07a26
  Paul McCarthy authored 5 years ago
  
  54f07a26
- DOC: stub for convert script · a0fb2dd2
  Paul McCarthy authored 5 years ago
  
  a0fb2dd2
- RF,BF: Clean up convertx5 script; fix to fnirt · d861c3e7
  Paul McCarthy authored 5 years ago
  
  d861c3e7
- DOC: Notes on X5 formats. Not finished. Other minor doc additions · d47a8af0
  Paul McCarthy authored 5 years ago
  
  d47a8af0
- ENH: convert_x5 updated to handle non-linear. Nothing is tested · a339d71e
  Paul McCarthy authored 5 years ago
  
  a339d71e
- RF: fsl.utils.trabsform -> fsl.transform · 5987f5b7
  Paul McCarthy authored 5 years ago
  
  5987f5b7
- ENH: Prototype X5 io module and x5<->flirt converter program. · 599a5de4
  Paul McCarthy authored 5 years ago
  
  599a5de4
Jul 16, 2019
- RF: Adjust matrix correctly (again) for >3D images. Adjust pixdims of higher · 84bd4950
  Paul McCarthy authored 5 years ago
  
  dimensions
  84bd4950
- RF: Warn when reference and image are both >3D · aec049f1
  Paul McCarthy authored 5 years ago
  
  aec049f1
- ENH: Support resampling images with more than 3 dimensions · 92466953
  Paul McCarthy authored 5 years ago
  
  92466953
May 08, 2019
- RF: resample_image print help if no args passed · aafa8133
  Paul McCarthy authored 5 years ago
  
  aafa8133
- ENH: New resample_image script · 75bf69d4
  Paul McCarthy authored 5 years ago
  
  75bf69d4
Jan 07, 2019
- MNT: Removed deprecated extract_noise script · 712e9c87
  Paul McCarthy authored 6 years ago
  
  712e9c87
Nov 22, 2018
- BF: imcp/immv scripts now accept incorrect file extensions on inputs · 47e0c37f
  Paul McCarthy authored 6 years ago
  
  47e0c37f
Oct 18, 2018
- MNT: Added back deprecated extract_noise script · 5cd1112a
  Paul McCarthy authored 6 years ago
  
  5cd1112a
- RF: extract_noise to fsl_ents · bc07af23
  Matthew Webster authored 6 years ago
  
  bc07af23
Oct 17, 2018
- MNT: renamed extract_noise to fsl_ents · e88cec62
  Matthew Webster authored 6 years ago
  
  e88cec62
Jul 02, 2018
- BF: Couple of small tweaks · c6beb86d
  Paul McCarthy authored 6 years ago
  
  c6beb86d
- TEST: Update tests · f8f758ae
  Paul McCarthy authored 6 years ago
  
  f8f758ae
- RF: Don't be lenient, error on bad components or confounds · 98e181dc
  Paul McCarthy authored 6 years ago
  
  98e181dc
- RF: Drop bad component indices · 998f3d77
  Paul McCarthy authored 6 years ago
  
  998f3d77
- ENH: New extract_noise script, for extracting ICA time series. · 08de23d5
  Paul McCarthy authored 6 years ago
  
  08de23d5
May 03, 2018
- BF: Another fix - label atlas value does not correspond to its index in the · 7aecb004
  Paul McCarthy authored 6 years ago
  
  AtlasDescription.labels list.
  7aecb004
- BF: Fixed invalid assumptions: · 801b6b7c
  Paul McCarthy authored 6 years ago
  
  - not all atlases have a 2mm version - label atlas value does not correspond to its index in the AtlasDescription.labels list.
  801b6b7c
Feb 12, 2018
- Suppress warnings in scripts · 22ad035d
  Paul McCarthy authored 7 years ago
  
  22ad035d
Jan 29, 2018
- Minor whitespace adjustments · faacc3e6
  Paul McCarthy authored 7 years ago
  
  faacc3e6
- Added docstring · a3d9749e
  Matthew Webster authored 7 years ago
  
  a3d9749e
- Create atlasquery ohi wrapper · 586d7d44
  Matthew Webster authored 7 years ago
  
  586d7d44
Dec 05, 2017
- Small bugfixes in atlasq, which never arose because I assumed that all atlas · de5013fc
  Paul McCarthy authored 7 years ago
  
  files have int type, which they don't. Also atlases handles spaces in XML specifications
  de5013fc
Nov 07, 2017
- imglob made into a standalone function · fe8f3227
  Paul McCarthy authored 7 years ago
  
  fe8f3227
Nov 03, 2017
- Atlasq no longer has its own version number · 9aecd402
  Paul McCarthy authored 7 years ago
  
  9aecd402
Nov 02, 2017
- RF: Further adjustments to immv/imcp exit code handling · 496ea672
  Paul McCarthy authored 7 years ago
  
  496ea672
- atlasq no longer has its own version · e51d70d1
  Paul McCarthy authored 7 years ago
  
  e51d70d1