Commits · 581400f2cf5c552e2b70ccfa839d43675e49afa6 · Michiel Cottaar / fslpy

Mar 16, 2020
- RF: Allow .gii surfaces, but don't try to auto-load them · 581400f2
  Paul McCarthy authored 5 years ago
  
  581400f2
Mar 02, 2020
- Merge branch 'bf/filetree' into 'master' · 6fefefb6
  Paul McCarthy authored 5 years ago
  
  Bf/filetree See merge request fsl/fslpy!203
  6fefefb6
- DOC: changelog · d0081286
  Paul McCarthy authored 5 years ago
  
  d0081286
- RF: remover dupe call to update · dd7b7afb
  Paul McCarthy authored 5 years ago
  
  dd7b7afb
Mar 01, 2020
- ENH: Added partial filling of variables into the templates · 2b6adc54
  Michiel Cottaar authored 5 years ago
  
  This is now the new default behaviour when loading a new file This change is not backwards compatible!
  2b6adc54
- TEST: Test query with multiple sub-trees. Passes against <=2.8.1, fails · 90b24051
  Paul McCarthy authored 5 years ago
  
  against >=2.8.2.
  90b24051
Feb 28, 2020
- Merge branch 'rf/protect_nifti_header' into 'master' · d5b35844
  Paul McCarthy authored 5 years ago
  
  Rf/protect nifti header See merge request fsl/fslpy!200
  d5b35844
- CI: Ok · 8217bd86
  Paul McCarthy authored 5 years ago
  
  8217bd86
- CI: don't know what's going on · 684a9b97
  Paul McCarthy authored 5 years ago
  
  684a9b97
- BF: Image can no longer clear headerref · c47b9269
  Paul McCarthy authored 5 years ago
  
  c47b9269
- DOC: changelog · a72acc33
  Paul McCarthy authored 5 years ago
  
  a72acc33
- RF,BF: Nifti.header is now protected via property setter - Failure in · 6abd4abf
  Paul McCarthy authored 5 years ago
  
  Image.save was resulting in a Nifti without a header.
  6abd4abf
Feb 27, 2020
- Merge branch 'mnt/release' into 'master' · 1b56bbc5
  Paul McCarthy authored 5 years ago
  
  DOC: changelog [skip ci] See merge request fsl/fslpy!198
  1b56bbc5
- DOC: changelog [skip ci] · a1f34c1e
  Paul McCarthy authored 5 years ago
  
  a1f34c1e
- Merge branch 'ref_template_parsing' into 'master' · 5a79b756
  Paul McCarthy authored 5 years ago
  
  REF: rewrote the parsing of the templates See merge request fsl/fslpy!197
  5a79b756
Feb 26, 2020

BUG: actually test the stated bug · 39e1cf1f
Michiel Cottaar authored 5 years ago
```
I think these tests would have failed before refactoring
```
39e1cf1f

REF: rewrote the parsing of the templates · 22595d38

Michiel Cottaar authored 5 years ago

There were some subtle bugs in the use of get_all, which should now be fixed. They were caused by having multiple optional variables and the result not being deterministic if these were iterated in different orders.

22595d38

Feb 20, 2020
- Merge branch 'mnt/release' into 'master' · 098dcf05
  Paul McCarthy authored 5 years ago
  
  Mnt/release See merge request fsl/fslpy!195
  098dcf05
- DOC: Writing down the release process [skip ci] · 66e55025
  Paul McCarthy authored 5 years ago
  
  66e55025
- DOC: changelog · 02a60121
  Paul McCarthy authored 5 years ago
  
  02a60121
- Merge branch 'bf/bids' into 'master' · f5d6cae7
  Paul McCarthy authored 5 years ago
  
  Bf/bids See merge request fsl/fslpy!194
  f5d6cae7
Feb 04, 2020
- TEST: regression · a302be8f
  Paul McCarthy authored 5 years ago
  
  a302be8f
- DOC: changelog · 459a1d13
  Paul McCarthy authored 5 years ago
  
  459a1d13
- BF: only load bids metadata if image is in bids dir, *and* has a bids filename. · f5f631e2
  Paul McCarthy authored 5 years ago
  
  f5f631e2
Jan 29, 2020
- Merge branch 'rf/mghimage_torig' into 'master' · e26fd9a1
  Paul McCarthy authored 5 years ago
  
  Rf/mghimage torig See merge request fsl/fslpy!192
  e26fd9a1
- DOC: changelog · f2ff03ce
  Paul McCarthy authored 5 years ago
  
  f2ff03ce
- DOC: changelog · dedeae3d
  Paul McCarthy authored 5 years ago
  
  dedeae3d
- TEST: test voxToSurfMat · 288adc0a
  Paul McCarthy authored 5 years ago
  
  288adc0a
Jan 28, 2020
- BF: MGH imagesmay have zooms which don't match their vox2ras affine - make · a127f656
  Paul McCarthy authored 5 years ago
  
  sure the MGHImage class preserves this.
  a127f656
- ENH: New voxToSurfMat, for generating a freesurfer affine for any image. · 25865a2a
  Paul McCarthy authored 5 years ago
  
  25865a2a
Jan 27, 2020
- Merge branch 'test/platform' into 'master' · 328cd4ef
  Paul McCarthy authored 5 years ago
  
  TEST: wx.GetApp() called through platform.haveGui) is returning an See merge request fsl/fslpy!190
  328cd4ef
- TEST: wx.GetApp() called through platform.haveGui) is returning an · 221aa557
  Paul McCarthy authored 5 years ago
  
  old App object, and causing test to fail.
  221aa557
- Merge branch 'rf/image_save' into 'master' · 8c832aad
  Paul McCarthy authored 5 years ago
  
  Rf/image save See merge request fsl/fslpy!188
  8c832aad
- TEST: Image.save semantics have changed · 686cde3a
  Paul McCarthy authored 5 years ago
  
  686cde3a
- MNT: copyright · 52c27360
  Paul McCarthy authored 5 years ago
  
  52c27360
- DOC: note on save method · cfe52385
  Paul McCarthy authored 5 years ago
  
  cfe52385
- Merge branch 'mnt/rel-2.8.0' into 'master' · 1e7ac7d1
  Paul McCarthy authored 5 years ago
  
  Mnt/rel 2.8.0 See merge request fsl/fslpy!186
  1e7ac7d1
- DOC: changelog · 827e6b6d
  Paul McCarthy authored 5 years ago
  
  827e6b6d
- MNT: pre-release version bump · 6ad7de9f
  Paul McCarthy authored 5 years ago
  
  6ad7de9f
- Merge branch 'bf/mesh_indices' into 'master' · 1f3fa431
  Paul McCarthy authored 5 years ago
  
  Bf/mesh indices See merge request fsl/fslpy!185
  1f3fa431