MRIBuilder.jl

"""
Builds and optimises NMR/MRI sequences.
"""
module MRIBuilder

include("scanners.jl")
include("build_sequences.jl")
include("variables.jl")
include("components/components.jl")
include("containers/containers.jl")
#include("pathways.jl")
#include("parts/parts.jl")
#include("post_hoc.jl")
#include("sequences/sequences.jl")
#include("printing.jl")
#include("sequence_io/sequence_io.jl")
#include("plot.jl")

import .BuildSequences: build_sequence, global_model, global_scanner, fixed
export build_sequence, global_model, global_scanner, fixed

import .Scanners: Scanner, B0, Siemens_Connectom, Siemens_Prisma, Siemens_Terra, Default_Scanner
export Scanner, B0, Siemens_Connectom, Siemens_Prisma, Siemens_Terra, Default_Scanner

import .Variables: variables, effective_time, make_generic, @defvar, duration
export variables, effective_time, make_generic, @defvar, duration

import .Components: InstantPulse, ConstantPulse, SincPulse, GenericPulse, InstantGradient, SingleReadout, ADC, CompositePulse, edge_times
export InstantPulse, ConstantPulse, SincPulse, GenericPulse, InstantGradient, SingleReadout, ADC, CompositePulse, edge_times

import .Containers: ContainerBlock, start_time, end_time, waveform, waveform_sequence, events, BaseBuildingBlock, BuildingBlock, Wait, BaseSequence, nrepeat, Sequence, AlternativeBlocks, match_blocks!, get_index_single_TR, readout_times, iter_blocks, iter_instant_gradients, iter_instant_pulses
export ContainerBlock, start_time, end_time, waveform, waveform_sequence, events, BaseBuildingBlock, BuildingBlock, Wait, BaseSequence, nrepeat, Sequence, AlternativeBlocks, match_blocks!, get_index_single_TR, readout_times, iter_blocks, iter_instant_gradients, iter_instant_pulses

#import .Pathways: Pathway, duration_transverse, duration_dephase, bval, bmat, get_pathway
#export Pathway, duration_transverse, duration_dephase, bval, bmat, get_pathway

#import .Parts: dwi_gradients, readout_event, excitation_pulse, refocus_pulse, Trapezoid, SliceSelect, LineReadout, opposite_kspace_lines, SpoiltSliceSelect, SliceSelectRephase, EPIReadout, interpret_image_size
#export dwi_gradients, readout_event, excitation_pulse, refocus_pulse, Trapezoid, SliceSelect, LineReadout, opposite_kspace_lines, SpoiltSliceSelect, SliceSelectRephase, EPIReadout, interpret_image_size

#import .PostHoc: adjust, merge_sequences
#export adjust, merge_sequences

#import .Sequences: GradientEcho, SpinEcho, DiffusionSpinEcho, DW_SE, DWI
#export GradientEcho, SpinEcho, DiffusionSpinEcho, DW_SE, DWI

#import .SequenceIO: read_sequence, write_sequence
#export read_sequence, write_sequence

#import .Plot: plot_sequence
#export plot_sequence

#import JuMP: @constraint, @objective, objective_function, value, Model
#export @constraint, @objective, objective_function, value, Model

end