Commits · 6ebae621cd7f69ff73844e4019b7ad830981207c · FSL / fslpy · GitLab

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Mar 29, 2019
- TEST: more query tests · 6ebae621
  Paul McCarthy authored 6 years ago
  
  6ebae621
- RF,BF: New asarray option to query method which defaults to false - query will · 2d0249c1
  Paul McCarthy authored 6 years ago
  
  default to returning a flat list of matches. subtree-related fixes to scan function
  2d0249c1
- TEST: unit tests for filetree.query · d7917456
  Paul McCarthy authored 6 years ago
  
  d7917456
- RF,DOC: Class documentation. Minor refactorings. Added comparison/equality · 80c379da
  Paul McCarthy authored 6 years ago
  
  operators to Match class so it can be ordered. Protect Match attributes via @property
  80c379da
- ENH: Mesh name can be updated · 69b5c54c
  Paul McCarthy authored 6 years ago
  
  69b5c54c
- BF: Ensure that data structure returned by query.variables method cannot · 34edfae0
  Paul McCarthy authored 6 years ago
  
  mutate canonical version
  34edfae0
- CI: Atlas data location can be customised with env var · 19571ee6
  Paul McCarthy authored 6 years ago
  
  19571ee6
- DOC: Query method docs, changed MAtch string repr · f456f6bd
  Paul McCarthy authored 6 years ago
  
  f456f6bd
- ENH,RF: Support for optional variables - a value of None is used for matches · 6bd0d7c2
  Paul McCarthy authored 6 years ago
  
  for which an optional variable is not present
  6bd0d7c2
- ENH: Fleshed out FileTreeQuery implementation. Need to write some tests. · 689f5fc3
  Paul McCarthy authored 6 years ago
  
  689f5fc3
- BF: Escape period characters in regexp so they are interpreted as literal · 7db08c9c
  Paul McCarthy authored 6 years ago
  
  7db08c9c
- RF: Remove FileTree.short_names, as I need a list of the short names that · 6a2d81a3
  Paul McCarthy authored 6 years ago
  
  actually exist on disk (and corrsepond to files).
  6a2d81a3
- BF: Missing import · 56cd55ef
  Paul McCarthy authored 6 years ago
  
  56cd55ef
- DOC: Changelog · adfab992
  Paul McCarthy authored 6 years ago
  
  adfab992
- TEST: Unit test for commonBase · 72f03764
  Paul McCarthy authored 6 years ago
  
  72f03764
- BF: Adjustments to commonBase function · 6ae4910d
  Paul McCarthy authored 6 years ago
  
  6ae4910d
- ENH: New FileTree method, just a convenience to get all short names · c63487f8
  Paul McCarthy authored 6 years ago
  
  c63487f8
- ENH: New function in path module - commonBase · 7fd39ba4
  Paul McCarthy authored 6 years ago
  
  7fd39ba4
- ENH: Minor tweaks to make FileTreeQuery functional · 4e87cbf9
  Paul McCarthy authored 6 years ago
  
  4e87cbf9
- ENH: New FileTreeQuery class, for searching for files in a FileTree · 6e3589c0
  Paul McCarthy authored 6 years ago
  
  6e3589c0
- ENH: New convnience function to list all known trees · e2bfd0d9
  Paul McCarthy authored 6 years ago
  
  e2bfd0d9
- Merge branch 'fslsub_update' into 'master' · dc3ee77e
  Paul McCarthy authored 6 years ago
  
  Fslsub update See merge request fsl/fslpy!105
  dc3ee77e
- ENH: allow potentially nested tuple of job ids in wait() · 67b37e79
  Michiel Cottaar authored 6 years ago
  
  67b37e79
- BUG: set correct __file__ when executing script · df5c1cda
  Michiel Cottaar authored 6 years ago
  
  df5c1cda
- DOC: Corrected fsl_sub return type · 5b0abbd9
  Michiel Cottaar authored 6 years ago
  
  5b0abbd9
Mar 19, 2019
- Merge branch 'expand_tree2' into 'master' · ffb2c5c2
  Paul McCarthy authored 6 years ago
  
  Expand trees See merge request fsl/fslpy!104
  ffb2c5c2
- BUG: fix typo in variable name · 1b746d41
  Michiel Cottaar authored 6 years ago
  
  1b746d41
- ENH: added HCP label GIFTI & CIFTI files · 67efceb7
  Michiel Cottaar authored 6 years ago
  
  67efceb7
- ENH: added resting state output to HCP directory tree · 5f9652dd
  Michiel Cottaar authored 6 years ago
  
  5f9652dd
Mar 13, 2019
- Merge branch 'various_fixes' into 'master' · 1b98cbce
  Paul McCarthy authored 6 years ago
  
  Various fixes See merge request fsl/fslpy!103
  1b98cbce
Feb 14, 2019
- ENH: added get_all_trees to simplify iterating over variables · 3c678cf9
  Michiel Cottaar authored 6 years ago
  
  3c678cf9
- BUG: ensure that string returned by get_all are path-like · 788e850f
  Michiel Cottaar authored 6 years ago
  
  788e850f
- BUG: don't allow variable to span more than one directory or file name · 4e4189de
  Michiel Cottaar authored 6 years ago
  
  4e4189de
- BUG: actually unset variable if set to None · edfafa71
  Michiel Cottaar authored 6 years ago
  
  edfafa71
- DOC: clarified usage of None in updating · 3a1a890a
  Michiel Cottaar authored 6 years ago
  
  3a1a890a
Feb 08, 2019
- Merge branch 'bf/dicom_mmap' into 'master' · 62c51e9e
  Paul McCarthy authored 6 years ago
  
  Bf/dicom mmap See merge request fsl/fslpy!102
  62c51e9e
- DOC: Optimistic changelog · 39f41562
  Paul McCarthy authored 6 years ago
  
  39f41562
- BF: Avoid mem-mapping dicom/niftis, as the tempdir will be deleted. · 94b6e749
  Paul McCarthy authored 6 years ago
  
  94b6e749
Feb 06, 2019
- Merge branch 'doc_filetree' into 'master' · 5bab6952
  Paul McCarthy authored 6 years ago
  
  Add documentation to FileTree See merge request fsl/fslpy!101
  5bab6952
- DOC: added simple pipeline example · 1913e6e7
  Michiel Cottaar authored 6 years ago
  
  1913e6e7